juliaformatter

src/converters.jl

@@ -6,11 +6,18 @@ A converter to pass into [`readSBML`](@ref) that enforces certain SBML level
 and version.
 """
 set_level_and_version(level, version) =
-    doc -> check_errors(ccall(sbml(:SBMLDocument_setLevelAndVersion), Cint,
-                              (VPtr, Cint, Cint),
-                              doc, level, version),
-                        doc,
-                        ErrorException("Setting of level and version did not succeed"))
+    doc -> check_errors(
+        ccall(
+            sbml(:SBMLDocument_setLevelAndVersion),
+            Cint,
+            (VPtr, Cint, Cint),
+            doc,
+            level,
+            version,
+        ),
+        doc,
+        ErrorException("Setting of level and version did not succeed"),
+    )
 
 """
     libsbml_convert(conversion_options::Vector{Pair{String, Dict{String, String}}})
@@ -38,8 +45,11 @@ libsbml_convert(
                     opt,
                 )
             end
-            check_errors(ccall(sbml(:SBMLDocument_convert), Cint, (VPtr, VPtr), doc, props),
-                         doc, ErrorException("Conversion returned errors"))
+            check_errors(
+                ccall(sbml(:SBMLDocument_convert), Cint, (VPtr, VPtr), doc, props),
+                doc,
+                ErrorException("Conversion returned errors"),
+            )
         end
     end
 

src/readsbml.jl

@@ -93,8 +93,7 @@ end)
 function readSBML(fn::String, sbml_conversion = document -> nothing)::SBML.Model
     doc = ccall(sbml(:readSBML), VPtr, (Cstring,), fn)
     try
-        get_error_messages(doc,
-                           AssertionError("Opening SBML document has reported errors"))
+        get_error_messages(doc, AssertionError("Opening SBML document has reported errors"))
 
         sbml_conversion(doc)
 

src/utils.jl

@@ -142,7 +142,7 @@ Show the error messages reported by SBML in the `doc` document and throw the
 function get_error_messages(doc::VPtr, error::Exception)
     n_errs = ccall(sbml(:SBMLDocument_getNumErrors), Cuint, (VPtr,), doc)
     for i = 1:n_errs
-        err = ccall(sbml(:SBMLDocument_getError), VPtr, (VPtr, Cuint), doc, i-1)
+        err = ccall(sbml(:SBMLDocument_getError), VPtr, (VPtr, Cuint), doc, i - 1)
         msg = string(strip(get_string(err, :XMLError_getMessage)))
         @error "SBML reported error: $(msg)"
     end