Commits · mo-mk-gecko-etc · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Aug 13, 2022.

20 Apr, 2022 2 commits
- more comments · b027b2db
  St. Elmo authored Apr 20, 2022
  
  b027b2db
- implement reviews · efdd9fb1
  St. Elmo authored Apr 20, 2022
  
  efdd9fb1
19 Apr, 2022 11 commits
- format again · 0127dfc4
  St. Elmo authored Apr 19, 2022
  
  0127dfc4
- add more docstrings · 4242a213
  St. Elmo authored Apr 19, 2022
  
  4242a213
- fix model · 3fcc98a1
  St. Elmo authored Apr 19, 2022
  
  3fcc98a1
- format again · a140d45e
  St. Elmo authored Apr 19, 2022
  
  a140d45e
- format · 6a539373
  St. Elmo authored Apr 19, 2022
  
  6a539373
- fixed gecko · 5c6c4f92
  St. Elmo authored Apr 19, 2022
  
  5c6c4f92
- make gecko resemble published version · c240484a
  St. Elmo authored Apr 19, 2022
  
  c240484a
- remove relaxed arm test · 09393470
  St. Elmo authored Apr 19, 2022
  
  09393470
- remove relaxed arms · 54a6be83
  St. Elmo authored Apr 19, 2022
  
  54a6be83
- fix more kwargs · 64291b6a
  St. Elmo authored Apr 19, 2022
  
  64291b6a
- fix test kwargs · f2d37f03
  St. Elmo authored Apr 19, 2022
  
  f2d37f03
18 Apr, 2022 2 commits
- fix errors · 36cdbcb5
  St. Elmo authored Apr 18, 2022
  
  36cdbcb5
- Minor docstring fixes · c9766ea3
  St. Elmo authored Apr 18, 2022
  
  c9766ea3
15 Apr, 2022 3 commits
- fix smoment syntax · 73b8f617
  Miroslav Kratochvil authored Apr 15, 2022
  
  73b8f617
- clean up · a563a2ae
  Miroslav Kratochvil authored Apr 15, 2022
  
  a563a2ae
- regroup enzymatic model utilities, remove bounds-changing functions · 3bcccccc
  Miroslav Kratochvil authored Apr 15, 2022
```
We might reintroduce bounds changing, but at the current state it its easier to
change the bounds in the inner model and then just regenerate the top layer.
```
  3bcccccc
14 Apr, 2022 7 commits
- please add function types · 352df865
  Miroslav Kratochvil authored Apr 14, 2022
  
  352df865
- more cleaning · f2b59ef9
  Miroslav Kratochvil authored Apr 14, 2022
  
  f2b59ef9
- add a shortcut for extracting sMOMENT mass utilization · f445a6d3
  Miroslav Kratochvil authored Apr 14, 2022
  
  f445a6d3
- simplify gecko a bit (remove unnecessary reaction arms) · 7244ee67
  Miroslav Kratochvil authored Apr 14, 2022
  
  7244ee67
- fixup: constructors · 86959197
  Miroslav Kratochvil authored Apr 14, 2022
  
  86959197
- formatting · b06877fe
  Miroslav Kratochvil authored Apr 14, 2022
  
  b06877fe
- remove the unnecessary reaction coupling from sMOMENT · ab630f1e
  Miroslav Kratochvil authored Apr 14, 2022
  
  ab630f1e
13 Apr, 2022 7 commits
- remove unused code, sprinkle TODOs · 50735009
  Miroslav Kratochvil authored Apr 13, 2022
  
  50735009
- switch gecko to gene-based mass groups (seems simpler) · a9677a09
  Miroslav Kratochvil authored Apr 13, 2022
  
  a9677a09
- add gecko.jl (finally!) · 54d9bed3
  Miroslav Kratochvil authored Apr 13, 2022
  
  54d9bed3
- works partially · 6663c2f7
  Miroslav Kratochvil authored Apr 13, 2022
  
  6663c2f7
- fixups vol 2 · 308190aa
  Miroslav Kratochvil authored Apr 13, 2022
  
  308190aa
- fixup · 09ad6a21
  Miroslav Kratochvil authored Apr 13, 2022
  
  09ad6a21
- gecko stage 1 (still TODO: the mass fraction coupling) · ea25d314
  Miroslav Kratochvil authored Apr 13, 2022
  
  ea25d314
12 Apr, 2022 8 commits
- document make_smoment_model · d8a69f72
  Miroslav Kratochvil authored Apr 12, 2022
  
  d8a69f72
- someone transposed the matrix for us! · d708a3bf
  Miroslav Kratochvil authored Apr 12, 2022
  
  d708a3bf
- many small smoment fixes that should make it just work · 1dd5d7b7
  Miroslav Kratochvil authored Apr 12, 2022
  
  1dd5d7b7
- prepare make_smoment_model for overloading · f4067a14
  Miroslav Kratochvil authored Apr 12, 2022
  
  f4067a14
- improve guessing of smoment coupling size · 07783ed1
  Miroslav Kratochvil authored Apr 12, 2022
  
  07783ed1
- forgot a file · 75c1fca1
  Miroslav Kratochvil authored Apr 12, 2022
  
  75c1fca1
- fix format · a2918bca
  Miroslav Kratochvil authored Apr 12, 2022
  
  a2918bca
- mangle accordingly. · 964aeb16
  Miroslav Kratochvil authored Apr 12, 2022
  
  964aeb16