Commits · ee0c328e250f64c8db10226ab3cb6744298820fc · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated May 20, 2022.

09 Sep, 2021 1 commit
- completely disable JuMP bridge constraints · e99747f6
  Miroslav Kratochvil authored Sep 09, 2021
```
(we do not use them at all, which is likely gonna hold for some time)
```
  e99747f6
06 Aug, 2021 1 commit
- simplify & unsurprise `set_optmodel_bound!` · 8d85d8b6
  Miroslav Kratochvil authored Aug 06, 2021
```
Closes #419
```
  8d85d8b6
04 Aug, 2021 3 commits
- remove optimize_model (it was not used) · 3d26f7cf
  Miroslav Kratochvil authored Aug 04, 2021
  
  3d26f7cf
- remove unnecessary COBREXA and JuMP scope where possible · e7054358
  Miroslav Kratochvil authored Aug 04, 2021
  
  e7054358
- document `optimize_objective` · c6bab97a
  Miroslav Kratochvil authored Aug 04, 2021
  
  c6bab97a
03 Aug, 2021 1 commit
- implement objective envelopes (aka production envelopes) · 57be2637
  Miroslav Kratochvil authored Aug 02, 2021
  
  57be2637
10 Jul, 2021 1 commit
- fix all whitespace errors and trails · c70eb6ef
  Miroslav Kratochvil authored Jul 10, 2021
```
Closes #375
```
  c70eb6ef
10 Jun, 2021 1 commit
- add a tutorial on screening the variants, also add variants · a486eee5
  Miroslav Kratochvil authored Jun 09, 2021 and Miroslav Kratochvil committed Jun 10, 2021
```
I needed to clean up some extra code. Notably, set_bound functions didn't have
the warning ! attached. That got me reeeeeeeaally confused.
```
  a486eee5
08 Jun, 2021 1 commit
- make generic · b17983c1
  St. Elmo authored Jun 07, 2021
```
Former-commit-id: dafa10d7
```
  b17983c1
27 May, 2021 2 commits
- sampling seems to work OK now · a43ad19a
  Miroslav Kratochvil authored May 27, 2021
  
  a43ad19a
- moved get_bound_vectors to solver · d8f95671
  St. Elmo authored May 11, 2021
  
  d8f95671
25 May, 2021 1 commit
- clean up `is_solved` use in FVA · 390f0dd1
  Miroslav Kratochvil authored May 25, 2021
  
  390f0dd1
13 May, 2021 1 commit
- precache the optimization model explicitly before analyses · 48e57728
  Miroslav Kratochvil authored May 13, 2021
  
  48e57728
06 May, 2021 9 commits
- automatic formatting changes · a63bd991
  cylon-x authored May 06, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  a63bd991
- update code · 98186aad
  St. Elmo authored May 06, 2021
  
  98186aad
- fix base docs formatting · e4ab01b0
  Miroslav Kratochvil authored May 06, 2021
  
  e4ab01b0
- automatic formatting changes · 1f8817e0
  cylon-x authored May 06, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  1f8817e0
- changed coupling extension · 7079d229
  St. Elmo authored May 06, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  7079d229
- automatic formatting changes · ab48efab
  cylon-x authored May 05, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  ab48efab
- extended make_opt_model · 8419ac38
  St. Elmo authored May 05, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  8419ac38
- reformat · cedc80e1
  Miroslav Kratochvil authored May 05, 2021
  
  cedc80e1
- clean solver · f07e6532
  Miroslav Kratochvil authored May 05, 2021
  
  f07e6532
16 Apr, 2021 1 commit
- The Big Rename of LinearModel · 4fae8d8d
  Miroslav Kratochvil authored Apr 16, 2021
  
  4fae8d8d
15 Apr, 2021 1 commit
- changed variable · e60fd2a5
  St. Elmo authored Apr 15, 2021
  
  e60fd2a5
06 Apr, 2021 1 commit
- implement reviews · 0128a96b
  St. Elmo authored Apr 06, 2021
  
  0128a96b
02 Apr, 2021 4 commits
- Revert "fix sense of optimize_model to match make_optimization_model" · 22b37acb
  St. Elmo authored Apr 02, 2021
```
This reverts commit ac7e2fe6.
```
  22b37acb
- fix sense of optimize_model to match make_optimization_model · ac7e2fe6
  St. Elmo authored Apr 02, 2021
  
  ac7e2fe6
- fixed the chaos :) · cb915651
  St. Elmo authored Apr 02, 2021
  
  cb915651
- remove extra returns · bae8f421
  St. Elmo authored Apr 01, 2021 and St. Elmo committed Apr 02, 2021
  
  bae8f421
01 Apr, 2021 2 commits
- remove extra returns · 9dd778b7
  St. Elmo authored Apr 01, 2021 and Miroslav Kratochvil committed Apr 01, 2021
  
  9dd778b7
- use pkg relativity · 6e6b1097
  Laurent Heirendt authored Apr 01, 2021
  
  6e6b1097
31 Mar, 2021 1 commit
- consistency: enforce serpent_case · bdf6d98a
  Miroslav Kratochvil authored Mar 31, 2021
```
Closes #32
```
  bdf6d98a
30 Mar, 2021 3 commits
- format again · a4a5b67d
  St. Elmo authored Mar 30, 2021
  
  a4a5b67d
- change solveLP back to optimizeModel · 18b1fa61
  St. Elmo authored Mar 30, 2021
  
  18b1fa61
- moved IO files around and fixed tests · 007ee8c6
  St. Elmo authored Mar 30, 2021
  
  007ee8c6
25 Mar, 2021 3 commits
- cleanup: format one forgotten formating · aba6451a
  Miroslav Kratochvil authored Mar 25, 2021
  
  aba6451a
- rename the abstract type to avoid ambiguity · 3a17bb05
  Miroslav Kratochvil authored Mar 25, 2021
  
  3a17bb05
- solveLP is now optimizeModel · 2f461a6b
  Miroslav Kratochvil authored Mar 25, 2021
  
  2f461a6b
24 Mar, 2021 1 commit
- more docs · aac41150
  Miroslav Kratochvil authored Mar 22, 2021
  
  aac41150
23 Mar, 2021 1 commit
- fixed fba - jump not cooperating, but implemented workaround · 08793a54
  St. Elmo authored Mar 23, 2021
  
  08793a54