Commits · e95c41304118524d083534941d26fd2478201d21 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated May 21, 2022.

10 Sep, 2021 1 commit
- bemp version to 1.0.5 · 836d6515
  Miroslav Kratochvil authored Sep 10, 2021
  
  836d6515
09 Sep, 2021 1 commit
- improve the ability of screening functions to use precompiled code · 05ca5133
  Miroslav Kratochvil authored Sep 09, 2021
```
Among other, this fixes a ~5-20% performance regression for FVA.
```
  05ca5133
26 Aug, 2021 1 commit
- CompatHelper: bump compat for "SBML" to "0.8" · 2854acde
  github-actions[bot] authored Aug 26, 2021
  
  2854acde
16 Aug, 2021 1 commit
- bump version 1.0.4 · 9c8dd472
  Miroslav Kratochvil authored Aug 16, 2021
  
  9c8dd472
12 Aug, 2021 2 commits
- rm DSEs · 2df93981
  St. Elmo authored Aug 12, 2021
  
  2df93981
- Added in place `add_reaction` and tests · f0d48d3a
  St. Elmo authored Aug 09, 2021
  
  f0d48d3a
10 Aug, 2021 1 commit
- bump SBML compat to 0.7.x · c7339ee0
  Miroslav Kratochvil authored Aug 10, 2021
```
Also closes #427
```
  c7339ee0
27 Jul, 2021 1 commit
- compatibility with SBML 0.6 · bacd6f6d
  Miroslav Kratochvil authored Jul 27, 2021
  
  bacd6f6d
10 Jul, 2021 1 commit
- bump version · d485aed5
  Miroslav Kratochvil authored Jul 10, 2021
  
  d485aed5
17 Jun, 2021 1 commit
- fix only compatible SBML versions · dd408eb6
  Miroslav Kratochvil authored Jun 17, 2021
  
  dd408eb6
16 Jun, 2021 1 commit
- CompatHelper: bump compat for "SBML" to "0.5" · 6f9a0f11
  github-actions[bot] authored Jun 16, 2021
  
  6f9a0f11
11 Jun, 2021 1 commit
- bump version · 4ebd24f5
  Miroslav Kratochvil authored Jun 11, 2021
  
  4ebd24f5
27 May, 2021 3 commits
- bump to 1.0.1 · 7ff61a1c
  Miroslav Kratochvil authored May 27, 2021
  
  7ff61a1c
- sampling seems to work OK now · a43ad19a
  Miroslav Kratochvil authored May 27, 2021
  
  a43ad19a
- return mcmcchains · c367af2f
  St. Elmo authored May 12, 2021
  
  c367af2f
25 May, 2021 2 commits
- completely remove Clp from tests and dependencies · 6b9830a5
  Miroslav Kratochvil authored May 25, 2021
  
  6b9830a5
- mass change GLPK to Tulip · bace15a0
  Miroslav Kratochvil authored May 25, 2021
  
  bace15a0
13 May, 2021 1 commit
- add a reference-to-a-disk-stored-model wrapper · 0d2ed376
  Miroslav Kratochvil authored May 13, 2021
  
  0d2ed376
11 May, 2021 7 commits
- add version compatibility, add the forgotten Literate to extras · 87e9b96b
  Miroslav Kratochvil authored May 11, 2021
  
  87e9b96b
- removed tulip · 36aa996a
  St. Elmo authored May 11, 2021
  
  36aa996a
- a small purge in dependencies · a019ac89
  Miroslav Kratochvil authored May 11, 2021
  
  a019ac89
- rename folder · 7e5e275f
  St. Elmo authored May 11, 2021
  
  7e5e275f
- temporarily remove colors · a7845247
  Miroslav Kratochvil authored May 11, 2021
  
  a7845247
- bump version · 977393b0
  Laurent Heirendt authored May 11, 2021
  
  977393b0
- add dates · 61df2879
  Laurent Heirendt authored May 11, 2021
  
  61df2879
03 May, 2021 1 commit
- add Tulip to targets · e5ca44e0
  Laurent Heirendt authored May 03, 2021
  
  e5ca44e0
30 Apr, 2021 1 commit
- move Tulip to test dep · 61fff3f7
  Laurent Heirendt authored Apr 30, 2021
  
  61fff3f7
27 Apr, 2021 1 commit
- added pretty printing of MetabolicModel · 7e16b913
  St. Elmo authored Apr 20, 2021
  
  7e16b913
22 Apr, 2021 1 commit
- added generic interface · 10481422
  St. Elmo authored Apr 22, 2021
  
  10481422
19 Apr, 2021 3 commits
- We actually need newer SBML · 6cacf30f
  Miroslav Kratochvil authored Apr 19, 2021
```
although nreleased ATM. :]
```
  6cacf30f
- loosen up the dependencies · c353976a
  Miroslav Kratochvil authored Apr 19, 2021
  
  c353976a
- add skeleton for SBML representation of genes and chemistry · 2d29baa1
  Miroslav Kratochvil authored Apr 18, 2021
  
  2d29baa1
06 Apr, 2021 3 commits
- remove Conda dep · 4294fd42
  Laurent Heirendt authored Apr 06, 2021
  
  4294fd42
- format and remove Gurobi · 7a029a29
  St. Elmo authored Apr 06, 2021
  
  7a029a29
- implement reviews · 0128a96b
  St. Elmo authored Apr 06, 2021
  
  0128a96b
03 Apr, 2021 1 commit
- stuck :( · 84a8e9d1
  St. Elmo authored Apr 03, 2021
  
  84a8e9d1
01 Apr, 2021 1 commit
- remove pycall · e0fac894
  Laurent Heirendt authored Apr 01, 2021
  
  e0fac894
30 Mar, 2021 1 commit
- moved IO files around and fixed tests · 007ee8c6
  St. Elmo authored Mar 30, 2021
  
  007ee8c6
17 Mar, 2021 1 commit
- all tests pass · 0a296f34
  St. Elmo authored Mar 17, 2021
  
  0a296f34
16 Mar, 2021 1 commit
- remove another dup · adafb074
  Laurent Heirendt authored Mar 16, 2021
  
  adafb074