Commits · e144353314f1b771269794ba7e928aa33bb16e71 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 05, 2023.

22 Feb, 2021 1 commit
- simplify · e1443533
  Miroslav Kratochvil authored Feb 22, 2021
  
  e1443533
19 Feb, 2021 2 commits
- preliminary distributed FVA (WIP: to be cleaned) · 9461ccd4
  Miroslav Kratochvil authored Feb 19, 2021
  
  9461ccd4
- [WIP] DistributedData FVA · bb1a48a4
  Miroslav Kratochvil authored Feb 11, 2021 and Miroslav Kratochvil committed Feb 19, 2021
  
  bb1a48a4
15 Feb, 2021 7 commits
- Merge pull request #13 from LCSB-BioCore/reader · 52246334
  Sylvain Arreckx authored Feb 15, 2021
```
simplify reader
```
  52246334
- simplify reader · 04703911
  Taneli Pusa authored Feb 15, 2021
  
  04703911
- Merge pull request #10 from LCSB-BioCore/sbml-loading · 21d442db
  Laurent Heirendt authored Feb 15, 2021
```
SBML loading
```
  21d442db
- SBML loading tests · 5bcc8994
  Miroslav Kratochvil authored Feb 11, 2021
  
  5bcc8994
- make the unit error check a bit less confusing · fc4d38a5
  Miroslav Kratochvil authored Feb 11, 2021
  
  fc4d38a5
- SBML XML to LinearModel loader · d439e37f
  Miroslav Kratochvil authored Jan 27, 2021
  
  d439e37f
- Merge pull request #11 from LCSB-BioCore/mk-minor-fixes · ed27cf92
  Laurent Heirendt authored Feb 15, 2021
```
various minor fixes
```
  ed27cf92
11 Feb, 2021 3 commits
- simplify test logging output · bd6e0da4
  Miroslav Kratochvil authored Feb 11, 2021
  
  bd6e0da4
- silence warnings · 91cefa68
  Miroslav Kratochvil authored Feb 11, 2021
  
  91cefa68
- remove triple negation · 03ba1340
  Miroslav Kratochvil authored Feb 11, 2021
  
  03ba1340
28 Jan, 2021 1 commit
- Merge pull request #9 from LCSB-BioCore/banner-fits-to-80col-terminal · 7fa5c1a7
  Laurent Heirendt authored Jan 28, 2021
```
Make the banner fit to 80column terminal.
```
  7fa5c1a7
27 Jan, 2021 1 commit
- Make the banner fit to 80column terminal. · 397c8038
  Miroslav Kratochvil authored Jan 27, 2021
```
I hope the padding on the left wasn't really necessary.
```
  397c8038
12 Jan, 2021 1 commit
- Merge pull request #8 from LCSB-BioCore/par · 1c1a2dfb
  Laurent Heirendt authored Jan 12, 2021
```
add parallel FVA
```
  1c1a2dfb
16 Dec, 2020 1 commit
- pass solver as usual · 182d8d9c
  Taneli Pusa authored Dec 16, 2020
  
  182d8d9c
15 Dec, 2020 1 commit
- hardcoded GLPK · 682da7cf
  Taneli Pusa authored Dec 15, 2020
  
  682da7cf
19 Nov, 2020 1 commit
- add parFVA · 5dedcd55
  Taneli Pusa authored Nov 19, 2020
  
  5dedcd55
02 Nov, 2020 6 commits
- Merge pull request #7 from LCSB-BioCore/community-docs · 7c064848
  Laurent Heirendt authored Nov 02, 2020
```
Community docs
```
  7c064848
- add code of conduct and contributing guide · fe293dd2
  Laurent Heirendt authored Nov 02, 2020
  
  fe293dd2
- add PR template · a811b918
  Laurent Heirendt authored Nov 02, 2020
  
  a811b918
- add issue template · 95662737
  Laurent Heirendt authored Nov 02, 2020
  
  95662737
- Merge pull request #1 from LCSB-BioCore/update-license · 09dd153d
  Laurent Heirendt authored Nov 02, 2020
```
formatting of license
```
  09dd153d
- formatting of license · 77630236
  Laurent Heirendt authored Nov 02, 2020
  
  77630236
19 Oct, 2020 1 commit
- squash of 153 commits · 5318cf8f
  Sylvain Arreckx authored Apr 09, 2020 and Laurent Heirendt committed Oct 19, 2020
  
  5318cf8f
09 Apr, 2020 1 commit
- add dimension checks for addReactions · b1752b49
  Sylvain Arreckx authored Apr 09, 2020
  
  b1752b49
08 Apr, 2020 3 commits
- refactoring · 705b21fa
  Sylvain Arreckx authored Apr 08, 2020
  
  705b21fa
- Merge branch 'consistency' into 'master' · 44e6a6c0
  Laurent Heirendt authored Apr 08, 2020
```
Basic consistency check

See merge request PerMedCoE/exaCOBRA.jl!10
```
  44e6a6c0
- new consistency check keyword · 92729829
  Sylvain Arreckx authored Apr 08, 2020
  
  92729829
07 Apr, 2020 1 commit
- add utility functions for number of reactions and metabolites · 6ebfd6d0
  Sylvain Arreckx authored Apr 07, 2020
  
  6ebfd6d0
04 Apr, 2020 1 commit
- Merge branch 'issue-4' into 'master' · fea7aeca
  Laurent Heirendt authored Apr 04, 2020
```
Set up CI/CD

Closes #4

See merge request PerMedCoE/exaCOBRA.jl!9
```
  fea7aeca
03 Apr, 2020 8 commits
- restructuring doc deployment · 1b95f413
  Laurent Heirendt authored Apr 03, 2020
  
  1b95f413
- changes to coverage computation · f5d2d773
  Laurent Heirendt authored Apr 03, 2020
  
  f5d2d773
- add coverage from https://gitlab.com/tkpapp/GitlabJuliaDemo.jl · e93ffeb5
  Laurent Heirendt authored Apr 03, 2020
  
  e93ffeb5
- rename toy models · 4e16f122
  Laurent Heirendt authored Apr 03, 2020
  
  4e16f122
- change docker image · 6059d244
  Laurent Heirendt authored Apr 03, 2020
  
  6059d244
- add lfs · 5a56ac26
  Laurent Heirendt authored Apr 03, 2020
  
  5a56ac26
- use julia-custom image · b3872e14
  Laurent Heirendt authored Apr 03, 2020
  
  b3872e14
- different julia version · 3581bc55
  Laurent Heirendt authored Apr 03, 2020
  
  3581bc55