Commits · df43b56111a33c173f4e0d32402c45c5d21aaecc · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 07, 2023.

06 May, 2021 2 commits
- remove missing tutorials · df43b561
  Miroslav Kratochvil authored May 04, 2021
  
  df43b561
- clean quickstart · b9e1205d
  Miroslav Kratochvil authored May 04, 2021
  
  b9e1205d
05 May, 2021 4 commits
- Merge pull request #174 from LCSB-BioCore/lh-add-docker · 2e23786b
  Laurent Heirendt authored May 05, 2021
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add docker container generation
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  2e23786b
- trigger push tag · 4ff6b869
  Laurent Heirendt authored May 05, 2021
  
  4ff6b869
- add action to release docker img · 5715de2a
  Laurent Heirendt authored May 05, 2021
  
  5715de2a
- add docker file · 410aa898
  Laurent Heirendt authored May 05, 2021
  
  410aa898
04 May, 2021 3 commits
- Merge pull request #169 from LCSB-BioCore/mk-fix-remote-namespaces · 1d721a10
  Laurent Heirendt authored May 04, 2021
  
  1d721a10
- this might reveal some truth about julia namespace resolution · ee133cb8
  Miroslav Kratochvil authored May 04, 2021
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Thanks @htpusa for reporting the problem!
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  ee133cb8
- Merge pull request #151 from LCSB-BioCore/mva-knockout-2 · 8ca41feb
  Laurent Heirendt authored May 04, 2021
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Mva knockout 2
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  8ca41feb
03 May, 2021 13 commits
- Merge pull request #157 from LCSB-BioCore/lh-update-readme · feea0fce
  Laurent Heirendt authored May 03, 2021
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Instructions for adding solver
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  feea0fce
- add Tulip to targets · e5ca44e0
  Laurent Heirendt authored May 03, 2021
  
  e5ca44e0
- Moved knockout! into rm! · e56c8a01
  Marvin van Aalst authored May 03, 2021
  
  e56c8a01
- Refactored knockout function · 954b8f1c
  Marvin van Aalst authored Apr 30, 2021
  
  954b8f1c
- Fixed tests · 06e384fc
  Marvin van Aalst authored Apr 30, 2021
  
  06e384fc
- Renamed gene associated reactions · ee0863db
  Marvin van Aalst authored Apr 30, 2021
  
  ee0863db
- Added dev notes regarding triple for loop · b04a3531
  Marvin van Aalst authored Apr 30, 2021
  
  b04a3531
- automatic formatting changes · 39818482
  cylon-x authored Apr 30, 2021
  
  39818482
- Remove obsolete code · d32d1c8b
  Marvin van Aalst authored Apr 29, 2021
  
  d32d1c8b
- Removed reaction_ids · 129d5a7b
  Marvin van Aalst authored Apr 29, 2021
  
  129d5a7b
- Added knockouts to new model structure · f921a4c2
  Marvin van Aalst authored Apr 29, 2021
  
  f921a4c2
- Merge pull request #161 from LCSB-BioCore/mo-improve-check_duplicates-function · ee2a414a
  Laurent Heirendt authored May 03, 2021
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Fix small things in `check_duplicate_annotations`
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  ee2a414a
- Merge pull request #162 from LCSB-BioCore/mo-fix-docs-standardmodel-utils · a1e274f4
  Laurent Heirendt authored May 03, 2021
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Fix docs and some functions that use `StandardModel`
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  a1e274f4
01 May, 2021 7 commits
- automatic formatting changes · 9efb277a
  cylon-x authored May 01, 2021
  
  9efb277a
- fixed exchange_reactions mistake · eb85ae98
  St. Elmo authored May 01, 2021
  
  eb85ae98
- moved function · 8a9c6df5
  St. Elmo authored May 01, 2021
  
  8a9c6df5
- update docs of functions · 609ec49f
  St. Elmo authored May 01, 2021
  
  609ec49f
- automatic formatting changes · 885fc725
  cylon-x authored May 01, 2021
  
  885fc725
- patch up functions · 3b20d863
  St. Elmo authored May 01, 2021
  
  3b20d863
- Merge pull request #158 from LCSB-BioCore/mk-mat-A · 3df7c5dd
  Laurent Heirendt authored May 01, 2021
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support some additional possibilities of MAT file content
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  3df7c5dd
30 Apr, 2021 11 commits
- Merge pull request #156 from LCSB-BioCore/mo-make-problem-mod-functions-generic · 8bc55d8c
  St. Elmo authored Apr 30, 2021
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Analysis problem modifications: make generic
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  8bc55d8c
- support some additional possibilities of MAT file content · 9b678d59
  Miroslav Kratochvil authored Apr 30, 2021
  
  9b678d59
- move Tulip to test dep · 61fff3f7
  Laurent Heirendt authored Apr 30, 2021
  
  61fff3f7
- instructions how to add a solver · 653b94bf
  Laurent Heirendt authored Apr 30, 2021
  
  653b94bf
- combine because the functions should all be generic! · 850b9e4a
  St. Elmo authored Apr 30, 2021
  
  850b9e4a
- Merge pull request #153 from LCSB-BioCore/lh-deploy-doc · 7fc2dc83
  Laurent Heirendt authored Apr 30, 2021
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Automatic conversion of Jupyter notebooks
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  7fc2dc83
- ignore warning msg if empty · 4bfd7bad
  Laurent Heirendt authored Apr 30, 2021
  
  4bfd7bad
- simplify if cond · 601d8f7a
  Laurent Heirendt authored Apr 30, 2021
  
  601d8f7a
- Revert "change counter" · 40bff55f
  Laurent Heirendt authored Apr 30, 2021
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This reverts commit b2de53bd.
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  40bff55f
- change counter · b2de53bd
  Laurent Heirendt authored Apr 30, 2021
  
  b2de53bd
- multiline if syntax in yml · b64fa033
  Laurent Heirendt authored Apr 30, 2021
  
  b64fa033