Commits · d708a3bf0a90e02ad4032cbf01735ae57924d70a · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Jan 30, 2023.

12 Apr, 2022 19 commits
- someone transposed the matrix for us! · d708a3bf
  Miroslav Kratochvil authored Apr 12, 2022
  
  d708a3bf
- many small smoment fixes that should make it just work · 1dd5d7b7
  Miroslav Kratochvil authored Apr 12, 2022
  
  1dd5d7b7
- prepare make_smoment_model for overloading · f4067a14
  Miroslav Kratochvil authored Apr 12, 2022
  
  f4067a14
- improve guessing of smoment coupling size · 07783ed1
  Miroslav Kratochvil authored Apr 12, 2022
  
  07783ed1
- forgot a file · 75c1fca1
  Miroslav Kratochvil authored Apr 12, 2022
  
  75c1fca1
- fix format · a2918bca
  Miroslav Kratochvil authored Apr 12, 2022
  
  a2918bca
- mangle accordingly. · 964aeb16
  Miroslav Kratochvil authored Apr 12, 2022
  
  964aeb16
- reimplement sMOMENT as a wrapper around the model · 29a13d62
  Miroslav Kratochvil authored Apr 12, 2022
  
  29a13d62
- clean up solver stuff · ed059878
  Miroslav Kratochvil authored Apr 12, 2022
```
(we reexport the MOI constants right?)
```
  ed059878
- clean up struct Isozyme · 2f8c0c93
  Miroslav Kratochvil authored Apr 12, 2022
  
  2f8c0c93
- add an example for flux_dict · 186da1de
  Miroslav Kratochvil authored Apr 12, 2022
  
  186da1de
- optimization sense should be passed to FBA via modifications · 4280b31d
  Miroslav Kratochvil authored Apr 12, 2022
  
  4280b31d
- clean up trailing blanks · 007645b8
  Miroslav Kratochvil authored Apr 12, 2022
  
  007645b8
- fix the last formatting error · 6a1ba06d
  Miroslav Kratochvil authored Apr 12, 2022
  
  6a1ba06d
- fix flux_dict error · 50dd3275
  St. Elmo authored Apr 12, 2022
  
  50dd3275
- get rid of kwargs · 92e53439
  St. Elmo authored Apr 12, 2022
  
  92e53439
- format and fix test · a7984e42
  St. Elmo authored Apr 12, 2022
  
  a7984e42
- implement reviews · d8ac8c69
  St. Elmo authored Apr 12, 2022
  
  d8ac8c69
- fix funcs more · fa004430
  St. Elmo authored Apr 12, 2022
  
  fa004430
11 Apr, 2022 2 commits
- fix func name · 3ff2ab67
  St. Elmo authored Apr 11, 2022
  
  3ff2ab67
- fix args · df1d4b37
  St. Elmo authored Apr 11, 2022
  
  df1d4b37
10 Apr, 2022 2 commits
- format · 45346049
  St. Elmo authored Apr 10, 2022
  
  45346049
- add smoment and fixup gecko · e846c58f
  St. Elmo authored Apr 10, 2022
  
  e846c58f
08 Apr, 2022 17 commits
- fixup gecko · 577b1af4
  St. Elmo authored Apr 08, 2022
  
  577b1af4
- fix has reaction edge case · dd8f9901
  St. Elmo authored Apr 05, 2022
  
  dd8f9901
- more kwargs · d5163911
  St. Elmo authored Apr 04, 2022
  
  d5163911
- fix kwargs in tests · 7e405eb6
  St. Elmo authored Apr 04, 2022
  
  7e405eb6
- fix another kwarg · 123d6d0a
  St. Elmo authored Apr 04, 2022
  
  123d6d0a
- update kwarg · 4bfa2bcc
  St. Elmo authored Apr 04, 2022
  
  4bfa2bcc
- format and fix · bb31baf0
  St. Elmo authored Apr 04, 2022
  
  bb31baf0
- add isozyme funct · c1379a0f
  St. Elmo authored Apr 04, 2022
  
  c1379a0f
- obliterate traling whitespace · 3998673e
  Miroslav Kratochvil authored Apr 03, 2022 and St. Elmo committed Apr 08, 2022
  
  3998673e
- added data source · 8dd3d1bc
  St. Elmo authored Apr 03, 2022
  
  8dd3d1bc
- format · 885d96b4
  St. Elmo authored Apr 03, 2022
  
  885d96b4
- fixed enzyme constrained problems · cf829449
  St. Elmo authored Apr 03, 2022
  
  cf829449
- gecko streamlined · 9f8aa921
  St. Elmo authored Apr 02, 2022
  
  9f8aa921
- reduce bound, unnecessarily high · 784ecf58
  St. Elmo authored Feb 25, 2022
  
  784ecf58
- fix test · bacdf065
  St. Elmo authored Feb 25, 2022
  
  bacdf065
- make explicit model change · 8ced80f6
  St. Elmo authored Feb 25, 2022
  
  8ced80f6
- update method signatures · 5a07fb50
  St. Elmo authored Feb 25, 2022
  
  5a07fb50