Commits · bee480a984405601d439108ef4058e0bfe37e9d0 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Aug 17, 2022.

10 Jan, 2022 1 commit
- bemp a small patch release · bee480a9
  Miroslav Kratochvil authored Jan 10, 2022
  
  bee480a9
06 Jan, 2022 1 commit
- use the keyword arguments in new version of SBML · 8a8c34ff
  Miroslav Kratochvil authored Dec 27, 2021
```
...hopefully ending the series of single-version compatibility
fixes once for all.
```
  8a8c34ff
07 Dec, 2021 2 commits
- fix the versioning for compatibility with General · 385cb74d
  Miroslav Kratochvil authored Dec 07, 2021
  
  385cb74d
- bump version 1.1.1 · d5db4728
  Miroslav Kratochvil authored Dec 07, 2021
  
  d5db4728
01 Dec, 2021 2 commits
- remove unnecessary dependency · 1ce8dfbf
  Miroslav Kratochvil authored Dec 01, 2021
  
  1ce8dfbf
- use a precise julia compat entry · 0dba1958
  Miroslav Kratochvil authored Dec 01, 2021
  
  0dba1958
26 Nov, 2021 2 commits
- make sure SBML 0.8.1 doesn't get installed as a dep · 739c6d45
  Miroslav Kratochvil authored Nov 26, 2021
```
(it doesn't work because of the units there)
```
  739c6d45
- remove unnecessary documentation deps from package · 2b2a84b8
  Miroslav Kratochvil authored Nov 24, 2021
  
  2b2a84b8
11 Nov, 2021 3 commits
- bump version to 1.1 · 0079d0b8
  Miroslav Kratochvil authored Nov 11, 2021
```
(#474 was the last issue on the roadmap)
```
  0079d0b8
- keep Project.toml stuff sorted · 68f8c24d
  Miroslav Kratochvil authored Nov 11, 2021
```
(no idea why Aqua testing let this through, it fails for me here)
```
  68f8c24d
- CompatHelper: bump compat for "JuMP" to "0.22" · e54960a7
  github-actions[bot] authored Nov 11, 2021
  
  e54960a7
02 Nov, 2021 1 commit
- Convert NLP version to classic loopless mixed integer formulation · 29769c75
  St. Elmo authored Oct 27, 2021
  
  29769c75
19 Oct, 2021 2 commits
- add version bounds for StableRNGs · f1d44cd6
  Miroslav Kratochvil authored Oct 18, 2021
  
  f1d44cd6
- convert the sampling to stable RNGs · 5972fff8
  Miroslav Kratochvil authored Oct 18, 2021
```
Closes #84
```
  5972fff8
15 Oct, 2021 1 commit
- add aqua testing · 525bcc51
  Miroslav Kratochvil authored Oct 13, 2021 and Miroslav Kratochvil committed Oct 15, 2021
  
  525bcc51
08 Oct, 2021 1 commit

Miroslav Kratochvil authored Oct 08, 2021

(this rollbacks the removal of JuMP bridge constraints, which seems to have
caused weird compatibility issues)

bec1685d

10 Sep, 2021 1 commit
- bemp version to 1.0.5 · 836d6515
  Miroslav Kratochvil authored Sep 10, 2021
  
  836d6515
09 Sep, 2021 1 commit
- improve the ability of screening functions to use precompiled code · 05ca5133
  Miroslav Kratochvil authored Sep 09, 2021
```
Among other, this fixes a ~5-20% performance regression for FVA.
```
  05ca5133
26 Aug, 2021 1 commit
- CompatHelper: bump compat for "SBML" to "0.8" · 2854acde
  github-actions[bot] authored Aug 26, 2021
  
  2854acde
16 Aug, 2021 1 commit
- bump version 1.0.4 · 9c8dd472
  Miroslav Kratochvil authored Aug 16, 2021
  
  9c8dd472
12 Aug, 2021 2 commits
- rm DSEs · 2df93981
  St. Elmo authored Aug 12, 2021
  
  2df93981
- Added in place `add_reaction` and tests · f0d48d3a
  St. Elmo authored Aug 09, 2021
  
  f0d48d3a
10 Aug, 2021 1 commit
- bump SBML compat to 0.7.x · c7339ee0
  Miroslav Kratochvil authored Aug 10, 2021
```
Also closes #427
```
  c7339ee0
27 Jul, 2021 1 commit
- compatibility with SBML 0.6 · bacd6f6d
  Miroslav Kratochvil authored Jul 27, 2021
  
  bacd6f6d
10 Jul, 2021 1 commit
- bump version · d485aed5
  Miroslav Kratochvil authored Jul 10, 2021
  
  d485aed5
17 Jun, 2021 1 commit
- fix only compatible SBML versions · dd408eb6
  Miroslav Kratochvil authored Jun 17, 2021
  
  dd408eb6
16 Jun, 2021 1 commit
- CompatHelper: bump compat for "SBML" to "0.5" · 6f9a0f11
  github-actions[bot] authored Jun 16, 2021
  
  6f9a0f11
11 Jun, 2021 1 commit
- bump version · 4ebd24f5
  Miroslav Kratochvil authored Jun 11, 2021
  
  4ebd24f5
27 May, 2021 3 commits
- bump to 1.0.1 · 7ff61a1c
  Miroslav Kratochvil authored May 27, 2021
  
  7ff61a1c
- sampling seems to work OK now · a43ad19a
  Miroslav Kratochvil authored May 27, 2021
  
  a43ad19a
- return mcmcchains · c367af2f
  St. Elmo authored May 12, 2021
  
  c367af2f
25 May, 2021 2 commits
- completely remove Clp from tests and dependencies · 6b9830a5
  Miroslav Kratochvil authored May 25, 2021
  
  6b9830a5
- mass change GLPK to Tulip · bace15a0
  Miroslav Kratochvil authored May 25, 2021
  
  bace15a0
13 May, 2021 1 commit
- add a reference-to-a-disk-stored-model wrapper · 0d2ed376
  Miroslav Kratochvil authored May 13, 2021
  
  0d2ed376
11 May, 2021 6 commits
- add version compatibility, add the forgotten Literate to extras · 87e9b96b
  Miroslav Kratochvil authored May 11, 2021
  
  87e9b96b
- removed tulip · 36aa996a
  St. Elmo authored May 11, 2021
  
  36aa996a
- a small purge in dependencies · a019ac89
  Miroslav Kratochvil authored May 11, 2021
  
  a019ac89
- rename folder · 7e5e275f
  St. Elmo authored May 11, 2021
  
  7e5e275f
- temporarily remove colors · a7845247
  Miroslav Kratochvil authored May 11, 2021
  
  a7845247
- bump version · 977393b0
  Laurent Heirendt authored May 11, 2021
  
  977393b0