Commits · b2f13d334056dd48cef524c5850cf1f150fc197c · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 08, 2023.

02 Nov, 2021 6 commits
- split API reference to sections · b2f13d33
  Miroslav Kratochvil authored Nov 02, 2021
  
  b2f13d33
- reorganize tutorials + notebooks · e3e7f4e4
  Miroslav Kratochvil authored Nov 02, 2021
  
  e3e7f4e4
- Merge pull request #484 from LCSB-BioCore/mk-tempfix-moma-tests · e511d5ea
  Miroslav Kratochvil authored Nov 02, 2021
```
temporarily increase tolerance on the MOMA test (needs fixup later)
```
  e511d5ea
- temporarily increase tolerance on the MOMA test (needs fixup later) · 68d89398
  Miroslav Kratochvil authored Nov 02, 2021
  
  68d89398
- Merge pull request #481 from LCSB-BioCore/mk-docs-gitlab-deploy · 85e06b49
  Miroslav Kratochvil authored Nov 02, 2021
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use the gitlab-documenter integration directly (attempt 1)
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  85e06b49
- use the gitlab-documenter integration directly · 77c8d8fd
  Miroslav Kratochvil authored Nov 02, 2021
  
  77c8d8fd
28 Oct, 2021 1 commit
- Merge pull request #477 from LCSB-BioCore/mk-ci-develop · 3b38927b
  Laurent Heirendt authored Oct 28, 2021
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run tests&docs on develop, trigger gitlab also on new tags
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  3b38927b
27 Oct, 2021 7 commits
- Merge pull request #476 from LCSB-BioCore/mk-silence-moma-test · 81e84357
  St. Elmo authored Oct 27, 2021
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silence MOMA tests
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  81e84357
- run docs on develop, trigger gitlab also on new tags · 303e5a94
  Miroslav Kratochvil authored Oct 27, 2021
  
  303e5a94
- avoid OSQP output in moma testing · 84de89eb
  Miroslav Kratochvil authored Oct 27, 2021
  
  84de89eb
- Merge pull request #472 from LCSB-BioCore/mo-moma · 776e84e1
  Miroslav Kratochvil authored Oct 27, 2021
```
moma implementation and tests
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  776e84e1
- Merge pull request #473 from LCSB-BioCore/mk-revive-binder · 2c5bf19a
  Laurent Heirendt authored Oct 27, 2021
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try to revive binder
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  2c5bf19a
- Merge pull request #475 from LCSB-BioCore/mk-mo-moma · 3380f829
  St. Elmo authored Oct 27, 2021
```
remove some of the repeated code, make MOMA more flexible
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  3380f829
- remove some of the repeated code, make MOMA more flexible · cf49055e
  Miroslav Kratochvil authored Oct 27, 2021
  
  cf49055e
26 Oct, 2021 3 commits
- binder: try to fake the old julia version and hope for the best · 4f4b7c68
  Miroslav Kratochvil authored Oct 26, 2021
  
  4f4b7c68
- Revert "remove binder reference" · 16f86276
  Miroslav Kratochvil authored Oct 26, 2021
```
This reverts commit 9a5d280f.
```
  16f86276
- Revert "`sed -i '/.*mybinder/d' docs/src/notebooks/*.jl`" · d494db5b
  Miroslav Kratochvil authored Oct 26, 2021
```
This reverts commit b7ab8576.
```
  d494db5b
25 Oct, 2021 12 commits
- fix small typos · edf87c7f
  St. Elmo authored Oct 25, 2021
  
  edf87c7f
- format · 80752d82
  St. Elmo authored Oct 25, 2021
  
  80752d82
- moma implementation and tests · c253e6d7
  St. Elmo authored Oct 25, 2021
  
  c253e6d7
- Merge pull request #470 from LCSB-BioCore/mk-rm-binder · 300a5270
  Miroslav Kratochvil authored Oct 25, 2021
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remove binder altogether
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  300a5270
- Merge pull request #469 from LCSB-BioCore/mk-docfixes · 50104bb6
  Miroslav Kratochvil authored Oct 25, 2021
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docfixes
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  50104bb6
- Merge pull request #471 from LCSB-BioCore/mk-doc-serialized · 617049bd
  Miroslav Kratochvil authored Oct 25, 2021
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explain the use of Serialized models better
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  617049bd
- various fixes in FluxSummary docs · 84bc6ebe
  Miroslav Kratochvil authored Oct 25, 2021
```
Closes #468
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  84bc6ebe
- fix docs index typo · 8498e572
  Miroslav Kratochvil authored Oct 25, 2021
  
  8498e572
- explain the use of Serialized models better · 32ffaf31
  Miroslav Kratochvil authored Oct 25, 2021
```
closes #361
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  32ffaf31
- remove binder reference · 9a5d280f
  Miroslav Kratochvil authored Oct 25, 2021
  
  9a5d280f
- `sed -i '/.*mybinder/d' docs/src/notebooks/*.jl` · b7ab8576
  Miroslav Kratochvil authored Oct 25, 2021
  
  b7ab8576
- fix readme · bd05e7c0
  Miroslav Kratochvil authored Oct 25, 2021
  
  bd05e7c0
19 Oct, 2021 4 commits
- Merge pull request #466 from LCSB-BioCore/mk-stable-rngs · 6a70f5ae
  Miroslav Kratochvil authored Oct 19, 2021
```
convert the sampling to stable RNGs
```
  6a70f5ae
- apparently seeds need to be uint · c178cf63
  Miroslav Kratochvil authored Oct 18, 2021 and Miroslav Kratochvil committed Oct 19, 2021
  
  c178cf63
- add version bounds for StableRNGs · f1d44cd6
  Miroslav Kratochvil authored Oct 18, 2021
  
  f1d44cd6
- convert the sampling to stable RNGs · 5972fff8
  Miroslav Kratochvil authored Oct 18, 2021
```
Closes #84
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  5972fff8
18 Oct, 2021 7 commits
- Merge pull request #431 from LCSB-BioCore/mo-max-min-driving-force · 826941ae
  St. Elmo authored Oct 18, 2021
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Implement max min driving force
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  826941ae
- Merge pull request #467 from LCSB-BioCore/mo-fix-master · cb7aae23
  Miroslav Kratochvil authored Oct 18, 2021
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fix docs + naming issue
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  cb7aae23
- Implement max min driving force + tests + docs · 5827fcb8
  St. Elmo authored Aug 10, 2021
  
  5827fcb8
- fix docs + naming issue · 5c54b1b4
  St. Elmo authored Oct 18, 2021
  
  5c54b1b4
- Merge pull request #465 from LCSB-BioCore/mk-serialized-unwrap · b72844de
  Miroslav Kratochvil authored Oct 18, 2021
```
Modifications unwrap the serialized model
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  b72844de
- tests for serialized model auto-unwraps · 7ee37e7d
  Miroslav Kratochvil authored Oct 18, 2021
  
  7ee37e7d
- add unwrapping model modifications for Serialized model · dfa346eb
  Miroslav Kratochvil authored Oct 18, 2021
  
  dfa346eb