Commits · 97b7f6391bfa4fc4a7100bacbb8bb3ec6f044572 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 07, 2023.

11 Jun, 2021 1 commit
- clean up analysis documentation and examples · b7f00cf7
  Miroslav Kratochvil authored Jun 11, 2021
```
Closes #318
```
  b7f00cf7
09 May, 2021 1 commit
- added references to all functions · 57f8adb4
  St. Elmo authored May 09, 2021
  
  57f8adb4
06 May, 2021 5 commits
- fixed all functions · dba54c58
  St. Elmo authored May 06, 2021
  
  dba54c58
- optimize the solver vs. optimizer ratio · 0ebea7c4
  Miroslav Kratochvil authored May 06, 2021
  
  0ebea7c4
- bulldoze FBA and FVA · dc8b02ba
  Miroslav Kratochvil authored May 05, 2021
  
  dc8b02ba
- remove FBA wrapper macros · 0e585620
  Miroslav Kratochvil authored May 04, 2021
```
(too wrappy)
```
  0e585620
- function list compiles with no warnings · d66d4a90
  Miroslav Kratochvil authored May 04, 2021
  
  d66d4a90
26 Apr, 2021 1 commit
- rework the filename extension routing and reduce polymorphism in model loading/saving · b22577e1
  Miroslav Kratochvil authored Apr 26, 2021
  
  b22577e1
15 Apr, 2021 1 commit
- fix example of doctest · 57ff032c
  Laurent Heirendt authored Apr 15, 2021
  
  57ff032c
12 Apr, 2021 1 commit
- enforce JuliaFormatter · 5d007ed5
  Miroslav Kratochvil authored Apr 12, 2021
  
  5d007ed5
08 Apr, 2021 1 commit
- Fixed loopless fba and docs · fb2883b7
  Marvin van Aalst authored Apr 08, 2021
  
  fb2883b7
06 Apr, 2021 1 commit
- implement reviews · 0128a96b
  St. Elmo authored Apr 06, 2021
  
  0128a96b
03 Apr, 2021 2 commits
- working fba macros · 6ea1e8f6
  St. Elmo authored Apr 03, 2021
  
  6ea1e8f6
- stuck :( · 84a8e9d1
  St. Elmo authored Apr 03, 2021
  
  84a8e9d1
02 Apr, 2021 10 commits
- unify FBA functions · 77d5e714
  Miroslav Kratochvil authored Apr 02, 2021
  
  77d5e714
- unify the fba _vec and _dict variants · d8a95ef4
  Miroslav Kratochvil authored Apr 02, 2021
  
  d8a95ef4
- fixed the chaos :) · cb915651
  St. Elmo authored Apr 02, 2021
  
  cb915651
- small updates · b87478e9
  St. Elmo authored Apr 02, 2021
  
  b87478e9
- added constraint modification callback · 0e04a8bb
  St. Elmo authored Apr 01, 2021
  
  0e04a8bb
- more updates · d2e2a6a9
  St. Elmo authored Apr 01, 2021
  
  d2e2a6a9
- added basic callbacks · ea7e1be4
  St. Elmo authored Apr 01, 2021
  
  ea7e1be4
- added constraint modification callback · 7f0fc9d2
  St. Elmo authored Apr 01, 2021
  
  7f0fc9d2
- fixed tests and formatted · 5edbc912
  St. Elmo authored Apr 01, 2021
  
  5edbc912
- remove extra returns · bae8f421
  St. Elmo authored Apr 01, 2021 and St. Elmo committed Apr 02, 2021
  
  bae8f421
01 Apr, 2021 4 commits
- fixed tests and formatted · 0c25fc81
  St. Elmo authored Apr 01, 2021 and Miroslav Kratochvil committed Apr 01, 2021
  
  0c25fc81
- remove extra returns · 9dd778b7
  St. Elmo authored Apr 01, 2021 and Miroslav Kratochvil committed Apr 01, 2021
  
  9dd778b7
- remove dep on SBML.Maybe · d04cff63
  Miroslav Kratochvil authored Apr 01, 2021
  
  d04cff63
- fix the nice FBA variants (again) · cc30e843
  Miroslav Kratochvil authored Apr 01, 2021
```
Closes #39
```
  cc30e843
31 Mar, 2021 2 commits
- clean up all trailing whitespace · f2b6185e
  Miroslav Kratochvil authored Mar 31, 2021
  
  f2b6185e
- consistency: enforce serpent_case · bdf6d98a
  Miroslav Kratochvil authored Mar 31, 2021
```
Closes #32
```
  bdf6d98a
30 Mar, 2021 4 commits
- format again · a4a5b67d
  St. Elmo authored Mar 30, 2021
  
  a4a5b67d
- change solveLP back to optimizeModel · 18b1fa61
  St. Elmo authored Mar 30, 2021
  
  18b1fa61
- format fix · 6a1743ac
  St. Elmo authored Mar 30, 2021
  
  6a1743ac
- fixed analysis tets · e2141aa5
  St. Elmo authored Mar 30, 2021
  
  e2141aa5
25 Mar, 2021 4 commits
- add tests for FBA outputs · 612067f8
  Miroslav Kratochvil authored Mar 25, 2021
  
  612067f8
- add additional FBA output formats · e5770617
  Miroslav Kratochvil authored Mar 24, 2021
  
  e5770617
- rename the abstract type to avoid ambiguity · 3a17bb05
  Miroslav Kratochvil authored Mar 25, 2021
  
  3a17bb05
- solveLP is now optimizeModel · 2f461a6b
  Miroslav Kratochvil authored Mar 25, 2021
  
  2f461a6b
24 Mar, 2021 1 commit
- more docs · aac41150
  Miroslav Kratochvil authored Mar 22, 2021
  
  aac41150
23 Mar, 2021 1 commit
- serial fva using cobramodel implemented · bfb68846
  St. Elmo authored Mar 23, 2021
  
  bfb68846