Commits · 954b8f1c5147b56326c3f102b6c40aa9b9376608 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 07, 2023.

03 May, 2021 8 commits
- Refactored knockout function · 954b8f1c
  Marvin van Aalst authored Apr 30, 2021
  
  954b8f1c
- Fixed tests · 06e384fc
  Marvin van Aalst authored Apr 30, 2021
  
  06e384fc
- Renamed gene associated reactions · ee0863db
  Marvin van Aalst authored Apr 30, 2021
  
  ee0863db
- Added dev notes regarding triple for loop · b04a3531
  Marvin van Aalst authored Apr 30, 2021
  
  b04a3531
- automatic formatting changes · 39818482
  cylon-x authored Apr 30, 2021
  
  39818482
- Remove obsolete code · d32d1c8b
  Marvin van Aalst authored Apr 29, 2021
  
  d32d1c8b
- Removed reaction_ids · 129d5a7b
  Marvin van Aalst authored Apr 29, 2021
  
  129d5a7b
- Added knockouts to new model structure · f921a4c2
  Marvin van Aalst authored Apr 29, 2021
  
  f921a4c2
01 May, 2021 1 commit
- Merge pull request #158 from LCSB-BioCore/mk-mat-A · 3df7c5dd
  Laurent Heirendt authored May 01, 2021
```
support some additional possibilities of MAT file content
```
  3df7c5dd
30 Apr, 2021 28 commits
- Merge pull request #156 from LCSB-BioCore/mo-make-problem-mod-functions-generic · 8bc55d8c
  St. Elmo authored Apr 30, 2021
```
Analysis problem modifications: make generic
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  8bc55d8c
- support some additional possibilities of MAT file content · 9b678d59
  Miroslav Kratochvil authored Apr 30, 2021
  
  9b678d59
- combine because the functions should all be generic! · 850b9e4a
  St. Elmo authored Apr 30, 2021
  
  850b9e4a
- Merge pull request #153 from LCSB-BioCore/lh-deploy-doc · 7fc2dc83
  Laurent Heirendt authored Apr 30, 2021
```
Automatic conversion of Jupyter notebooks
```
  7fc2dc83
- ignore warning msg if empty · 4bfd7bad
  Laurent Heirendt authored Apr 30, 2021
  
  4bfd7bad
- simplify if cond · 601d8f7a
  Laurent Heirendt authored Apr 30, 2021
  
  601d8f7a
- Revert "change counter" · 40bff55f
  Laurent Heirendt authored Apr 30, 2021
```
This reverts commit b2de53bd.
```
  40bff55f
- change counter · b2de53bd
  Laurent Heirendt authored Apr 30, 2021
  
  b2de53bd
- multiline if syntax in yml · b64fa033
  Laurent Heirendt authored Apr 30, 2021
  
  b64fa033
- add deps to doc for notebooks · 2c505739
  Laurent Heirendt authored Apr 30, 2021
  
  2c505739
- add if condition to tutorial conversion · aa121d3e
  Laurent Heirendt authored Apr 30, 2021
  
  aa121d3e
- add conversion of tutorials · 4f3cffdb
  Laurent Heirendt authored Apr 30, 2021
  
  4f3cffdb
- Merge pull request #150 from LCSB-BioCore/lh-fix-welcome-btn · dbb9b384
  Laurent Heirendt authored Apr 30, 2021
```
fix welcome contributions button
```
  dbb9b384
- fix welcome btn · b52e0efd
  Laurent Heirendt authored Apr 30, 2021
  
  b52e0efd
- Merge pull request #143 from LCSB-BioCore/lh-add-gource · 82ad28c2
  Laurent Heirendt authored Apr 30, 2021
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add stage to generate gource history automatically
```
  82ad28c2
- fix yml syntax · a85b4ad6
  Laurent Heirendt authored Apr 30, 2021
  
  a85b4ad6
- add artefacts and dep for doc · 393533ff
  Laurent Heirendt authored Apr 30, 2021
  
  393533ff
- Merge pull request #146 from LCSB-BioCore/lh-add-attributes · 0dcf21f2
  Laurent Heirendt authored Apr 30, 2021
```
add gitattributes file
```
  0dcf21f2
- add docker login to private gource repo · 6b752dbf
  Laurent Heirendt authored Apr 30, 2021
  
  6b752dbf
- change name of token · 3059711f
  Laurent Heirendt authored Apr 30, 2021
  
  3059711f
- add gitattributes file · aaf355d4
  Laurent Heirendt authored Apr 30, 2021
  
  aaf355d4
- remove obsolete cmd leftover · 4a8baf6f
  Laurent Heirendt authored Apr 30, 2021
  
  4a8baf6f
- fix issue with tls · 8baa1887
  Laurent Heirendt authored Apr 30, 2021
  
  8baa1887
- add missing vars · e65b616b
  Laurent Heirendt authored Apr 30, 2021
  
  e65b616b
- minor changes to settings · 1d61e127
  Laurent Heirendt authored Apr 30, 2021
  
  1d61e127
- Merge pull request #138 from LCSB-BioCore/lh-polish-readme-1 · 11ff55c0
  Laurent Heirendt authored Apr 30, 2021
```
updated readme
```
  11ff55c0
- change to dind · fc6d5c8e
  Laurent Heirendt authored Apr 30, 2021
  
  fc6d5c8e
- Merge pull request #144 from LCSB-BioCore/mo-lh-polish-readme-1 · 4f5ed2d6
  Laurent Heirendt authored Apr 30, 2021
```
Simplified example in quick start
```
  4f5ed2d6
29 Apr, 2021 3 commits
- fixed spelling + small issues · e07e4f15
  St. Elmo authored Apr 29, 2021
  
  e07e4f15
- simplified example · 8c31743a
  St. Elmo authored Apr 29, 2021
  
  8c31743a
- add specific vars · c1fc0fd0
  Laurent Heirendt authored Apr 29, 2021
  
  c1fc0fd0