Commits · 743785279309f008712b5754c8b32c6e7bf38bf4 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Jan 29, 2023.

08 Jun, 2021 28 commits
- add abstract · 74378527
  St. Elmo authored Jun 08, 2021
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  74378527
- implement reviews · 0a18faf2
  St. Elmo authored Jun 08, 2021
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  0a18faf2
- fix tests · b0d1f078
  St. Elmo authored Jun 08, 2021
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  b0d1f078
- added looks like exchange metabolite · 1022d312
  St. Elmo authored Jun 08, 2021
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  1022d312
- update meaning of looks_like_exchange_reaction · 8c751cca
  St. Elmo authored Jun 08, 2021
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  8c751cca
- fix docstrings · a726c817
  St. Elmo authored Jun 08, 2021
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  a726c817
- added tests for reaction_equation · 3216bba1
  St. Elmo authored Jun 08, 2021
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  3216bba1
- add int variants · 0c309894
  St. Elmo authored Jun 08, 2021
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  0c309894
- fixed tests · 47873295
  St. Elmo authored Jun 07, 2021
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  47873295
- even more general · 75066ddf
  St. Elmo authored Jun 07, 2021
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  75066ddf
- added downloads + fixed JSONModel issue · 81a29444
  St. Elmo authored Jun 07, 2021
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  81a29444
- fix tests · 7596bca4
  St. Elmo authored Jun 07, 2021
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  7596bca4
- add tests · abc6e3da
  St. Elmo authored Jun 07, 2021
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  abc6e3da
- add tests · 88335fb0
  St. Elmo authored Jun 07, 2021
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  88335fb0
- made functions generic · 871e5ed4
  St. Elmo authored Jun 07, 2021
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  871e5ed4
- add reaction_equation to CoreModelCoupled interface · 3bd21494
  St. Elmo authored Jun 07, 2021
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  3bd21494
- make generic · b17983c1
  St. Elmo authored Jun 07, 2021
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  b17983c1
- implement reviews · a19c9c10
  St. Elmo authored Jun 06, 2021
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  a19c9c10
- remove unnecessary brackets · 62ca67ae
  St. Elmo authored Jun 05, 2021
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  62ca67ae
- remove array brackets · 80e679a0
  St. Elmo authored Jun 05, 2021
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  80e679a0
- update stdmodel find docstrings · 97859dd5
  St. Elmo authored Jun 05, 2021
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  97859dd5
- 🐛 fix find functions but slightly change meaning · 288dc1ac
  St. Elmo authored Jun 05, 2021
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  288dc1ac
- 🚚 move core model test functions to utils dir · aeeaef09
  St. Elmo authored Jun 05, 2021
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  aeeaef09
- 🚀 done adding find functions · 65ed0102
  St. Elmo authored Jun 05, 2021
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  65ed0102
- added sbml format prefix to find function · 0a1d6c3a
  St. Elmo authored Jun 05, 2021
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  0a1d6c3a
- ♿ move find_xxx functions to utilities · 4281af7c
  St. Elmo authored Jun 05, 2021
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  4281af7c
- Merge pull request #307 from LCSB-BioCore/htpusa-CoreModelCoupled · 24f42f2e
  Miroslav Kratochvil authored Jun 08, 2021
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Missing functions for CoreModelCoupled

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  24f42f2e
- Merge pull request #308 from LCSB-BioCore/mo-osqp-warnings · 233205f4
  Laurent Heirendt authored Jun 08, 2021
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💄 ⚠️ OSQP

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  233205f4
07 Jun, 2021 12 commits
- warnings complete! · 844eff3b
  St. Elmo authored Jun 07, 2021
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  844eff3b
- don't recommend OSQP · b58d939e
  St. Elmo authored Jun 07, 2021
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  b58d939e
- quick and dirty docstrings for reconstruction/CoreModelCoupled · 31a334e0
  Taneli Pusa authored Jun 07, 2021
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  31a334e0
- quick and dirty docstrings for reconstruction/CoreModel · 96c5ad19
  Taneli Pusa authored Jun 07, 2021
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  96c5ad19
- Merge remote-tracking branch 'upstream/mk-doc-coupling-reconstruction' into htpusa-CoreModelCoupled · 91536ca0
  Taneli Pusa authored Jun 07, 2021
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  91536ca0
- Merge branch 'master' into htpusa-CoreModelCoupled · 6909de02
  Taneli Pusa authored Jun 07, 2021
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  6909de02
- Merge pull request #304 from LCSB-BioCore/mo-update-contribution · cc5d730d
  Laurent Heirendt authored Jun 07, 2021
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📝 Add emoji references

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  cc5d730d
- Merge pull request #303 from LCSB-BioCore/mk-warmup-optimizer · 95118657
  Miroslav Kratochvil authored Jun 07, 2021
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warmup jump+tulip code to save much time later in testing

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  95118657
- Merge pull request #306 from LCSB-BioCore/mk-standardmodel-copy · 2e51cac8
  Miroslav Kratochvil authored Jun 07, 2021
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add shallow copying of StandardModel stuff, useful for writing custom…

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  2e51cac8
- add shallow copying of StandardModel stuff, useful for writing custom variants · a9e85ddb
  Miroslav Kratochvil authored Jun 07, 2021
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Closes #256


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  a9e85ddb
- document CodeModelCoupled reconstruction · 499d44d0
  Miroslav Kratochvil authored Jun 07, 2021
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Closes #255


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  499d44d0
- even more specific where the emoji goes · eb95fd8d
  St. Elmo authored Jun 07, 2021
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  eb95fd8d