Commits · 5318cf8f69ea364a12e68177d50dcb6556634941 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 08, 2023.

19 Oct, 2020 1 commit
- squash of 153 commits · 5318cf8f
  Sylvain Arreckx authored Apr 09, 2020 and Laurent Heirendt committed Oct 19, 2020
  
  5318cf8f
09 Apr, 2020 1 commit
- add dimension checks for addReactions · b1752b49
  Sylvain Arreckx authored Apr 09, 2020
  
  b1752b49
08 Apr, 2020 3 commits
- refactoring · 705b21fa
  Sylvain Arreckx authored Apr 08, 2020
  
  705b21fa
- Merge branch 'consistency' into 'master' · 44e6a6c0
  Laurent Heirendt authored Apr 08, 2020
```
Basic consistency check

See merge request PerMedCoE/exaCOBRA.jl!10
```
  44e6a6c0
- new consistency check keyword · 92729829
  Sylvain Arreckx authored Apr 08, 2020
  
  92729829
07 Apr, 2020 1 commit
- add utility functions for number of reactions and metabolites · 6ebfd6d0
  Sylvain Arreckx authored Apr 07, 2020
  
  6ebfd6d0
04 Apr, 2020 1 commit
- Merge branch 'issue-4' into 'master' · fea7aeca
  Laurent Heirendt authored Apr 04, 2020
```
Set up CI/CD

Closes #4

See merge request PerMedCoE/exaCOBRA.jl!9
```
  fea7aeca
03 Apr, 2020 23 commits
- restructuring doc deployment · 1b95f413
  Laurent Heirendt authored Apr 03, 2020
  
  1b95f413
- changes to coverage computation · f5d2d773
  Laurent Heirendt authored Apr 03, 2020
  
  f5d2d773
- add coverage from https://gitlab.com/tkpapp/GitlabJuliaDemo.jl · e93ffeb5
  Laurent Heirendt authored Apr 03, 2020
  
  e93ffeb5
- rename toy models · 4e16f122
  Laurent Heirendt authored Apr 03, 2020
  
  4e16f122
- change docker image · 6059d244
  Laurent Heirendt authored Apr 03, 2020
  
  6059d244
- add lfs · 5a56ac26
  Laurent Heirendt authored Apr 03, 2020
  
  5a56ac26
- use julia-custom image · b3872e14
  Laurent Heirendt authored Apr 03, 2020
  
  b3872e14
- different julia version · 3581bc55
  Laurent Heirendt authored Apr 03, 2020
  
  3581bc55
- different julia image · 76423bd2
  Laurent Heirendt authored Apr 03, 2020
  
  76423bd2
- new yml · e0acf9d3
  Laurent Heirendt authored Apr 03, 2020
  
  e0acf9d3
- fix -e · 1569ca8a
  Laurent Heirendt authored Apr 03, 2020
  
  1569ca8a
- changes to script · ea60b960
  Laurent Heirendt authored Apr 03, 2020
  
  ea60b960
- add gitlab ci yml · 473a6399
  Laurent Heirendt authored Apr 03, 2020
  
  473a6399
- Merge branch 'develop' into 'master' · 01bc06d0
  Laurent Heirendt authored Apr 03, 2020
```
Develop

See merge request PerMedCoE/exaCOBRA.jl!8
```
  01bc06d0
- Merge branch 'toyModels' into 'develop' · 2daf90df
  Laurent Heirendt authored Apr 03, 2020
```
add toymodels

See merge request PerMedCoE/exaCOBRA.jl!7
```
  2daf90df
- add toymodels · 571969db
  Sylvain Arreckx authored Apr 03, 2020
  
  571969db
- Merge branch 'addReactions' into 'develop' · c9afce32
  Laurent Heirendt authored Apr 03, 2020
```
Hot fix

See merge request PerMedCoE/exaCOBRA.jl!6
```
  c9afce32
- use defined types in addReactions · 1dcf4ca8
  Sylvain Arreckx authored Apr 03, 2020
  
  1dcf4ca8
- Merge branch 'addReactions' into 'develop' · 39e3ed30
  Laurent Heirendt authored Apr 03, 2020
```
fix addReactions

See merge request PerMedCoE/exaCOBRA.jl!5
```
  39e3ed30
- fix addReactions · 8e9359e3
  Sylvain Arreckx authored Apr 03, 2020
  
  8e9359e3
- Merge branch 'typeRework' into 'develop' · 4c5d1916
  Laurent Heirendt authored Apr 03, 2020
```
Better use types

See merge request PerMedCoE/exaCOBRA.jl!4
```
  4c5d1916
- adding Documenter · 5f527ff2
  Sylvain Arreckx authored Apr 01, 2020
  
  5f527ff2
- better use types · af6f51bb
  Sylvain Arreckx authored Apr 01, 2020
  
  af6f51bb
02 Apr, 2020 7 commits
- Merge branch 'io-mat' into 'develop' · f502e75c
  Laurent Heirendt authored Apr 02, 2020
```
Mat file reader

See merge request PerMedCoE/exaCOBRA.jl!3
```
  f502e75c
- Add cycle to check variables present in MAT. LFS for tracking MAT files · 852de35b
  Alberto Noronha authored Apr 02, 2020
  
  852de35b
- Add LFS to track .mat files · b4ef2fd4
  Alberto Noronha authored Apr 02, 2020
  
  b4ef2fd4
- doc line · 9bcaf9b9
  Alberto Noronha authored Apr 02, 2020
  
  9bcaf9b9
- Add 2 simple tests for matReader · 71eff7a4
  Alberto Noronha authored Apr 02, 2020
  
  71eff7a4
- Add some simple debug on file read · acfee139
  Alberto Noronha authored Apr 02, 2020
  
  acfee139
- First quick & dirty mat loader · 55f1826e
  Alberto Noronha authored Apr 02, 2020
  
  55f1826e
01 Apr, 2020 2 commits
- Merge branch 'solveLP' into 'develop' · 3177c256
  Laurent Heirendt authored Apr 01, 2020
```
Solve a LP using JuMP

See merge request PerMedCoE/exaCOBRA.jl!2
```
  3177c256
- renamed main struct · e5599cf4
  Sylvain Arreckx authored Apr 01, 2020
  
  e5599cf4
30 Mar, 2020 1 commit
- use JuMP to solve the LP · f19754a4
  Sylvain Arreckx authored Mar 30, 2020
  
  f19754a4