Commits · 4fc2d47ca95de71020b99dfc83fa843e85942a54 · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Jan 29, 2023.

06 May, 2021 21 commits
- small fixes for pfba · 4fc2d47c
  St. Elmo authored May 04, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  4fc2d47c
- automatic formatting changes · e5bb0997
  cylon-x authored May 04, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  e5bb0997
- clean up testing directory · bea54389
  Miroslav Kratochvil authored May 04, 2021
```
Closes #65
```
  bea54389
- fix warnings again · ff50bb9d
  Miroslav Kratochvil authored May 04, 2021
  
  ff50bb9d
- include the modifications dir · a52b3bf4
  Miroslav Kratochvil authored May 04, 2021
  
  a52b3bf4
- automatic formatting changes · eac6b841
  cylon-x authored May 04, 2021 and Miroslav Kratochvil committed May 06, 2021
  
  eac6b841
- rename the reconstruction functions to match the types they act on · 5062c3c5
  Miroslav Kratochvil authored May 04, 2021
  
  5062c3c5
- simplify some math · 21ddddb8
  Miroslav Kratochvil authored May 04, 2021
  
  21ddddb8
- properly overload _unparse_grr · 9a19c93f
  Miroslav Kratochvil authored May 04, 2021
  
  9a19c93f
- remove unnecessary StdModel comparison (the default one is sufficient) · ef8bc28d
  Miroslav Kratochvil authored May 04, 2021
  
  ef8bc28d
- internalize Maybe helpers · 70f7c239
  Miroslav Kratochvil authored May 04, 2021
  
  70f7c239
- remove FBA wrapper macros · 0e585620
  Miroslav Kratochvil authored May 04, 2021
```
(too wrappy)
```
  0e585620
- save eyes · 14137cae
  Miroslav Kratochvil authored May 04, 2021
  
  14137cae
- axe _firstmatch · 82976ded
  Miroslav Kratochvil authored May 04, 2021
  
  82976ded
- temporarily remove ACHR · 371fb703
  Miroslav Kratochvil authored May 04, 2021
  
  371fb703
- temporarily remove loopless FBA · 2b5a46f7
  Miroslav Kratochvil authored May 04, 2021
  
  2b5a46f7
- structure for new tutorials · 15c73701
  Miroslav Kratochvil authored May 04, 2021
  
  15c73701
- disable all examples to get a warningless state · 658b552e
  Miroslav Kratochvil authored May 04, 2021
  
  658b552e
- function list compiles with no warnings · d66d4a90
  Miroslav Kratochvil authored May 04, 2021
  
  d66d4a90
- remove missing tutorials · df43b561
  Miroslav Kratochvil authored May 04, 2021
  
  df43b561
- clean quickstart · b9e1205d
  Miroslav Kratochvil authored May 04, 2021
  
  b9e1205d
05 May, 2021 4 commits
- Merge pull request #174 from LCSB-BioCore/lh-add-docker · 2e23786b
  Laurent Heirendt authored May 05, 2021
```
add docker container generation
```
  2e23786b
- trigger push tag · 4ff6b869
  Laurent Heirendt authored May 05, 2021
  
  4ff6b869
- add action to release docker img · 5715de2a
  Laurent Heirendt authored May 05, 2021
  
  5715de2a
- add docker file · 410aa898
  Laurent Heirendt authored May 05, 2021
  
  410aa898
04 May, 2021 3 commits
- Merge pull request #169 from LCSB-BioCore/mk-fix-remote-namespaces · 1d721a10
  Laurent Heirendt authored May 04, 2021
  
  1d721a10
- this might reveal some truth about julia namespace resolution · ee133cb8
  Miroslav Kratochvil authored May 04, 2021
```
Thanks @htpusa for reporting the problem!
```
  ee133cb8
- Merge pull request #151 from LCSB-BioCore/mva-knockout-2 · 8ca41feb
  Laurent Heirendt authored May 04, 2021
```
Mva knockout 2
```
  8ca41feb
03 May, 2021 12 commits
- Merge pull request #157 from LCSB-BioCore/lh-update-readme · feea0fce
  Laurent Heirendt authored May 03, 2021
```
Instructions for adding solver
```
  feea0fce
- add Tulip to targets · e5ca44e0
  Laurent Heirendt authored May 03, 2021
  
  e5ca44e0
- Moved knockout! into rm! · e56c8a01
  Marvin van Aalst authored May 03, 2021
  
  e56c8a01
- Refactored knockout function · 954b8f1c
  Marvin van Aalst authored Apr 30, 2021
  
  954b8f1c
- Fixed tests · 06e384fc
  Marvin van Aalst authored Apr 30, 2021
  
  06e384fc
- Renamed gene associated reactions · ee0863db
  Marvin van Aalst authored Apr 30, 2021
  
  ee0863db
- Added dev notes regarding triple for loop · b04a3531
  Marvin van Aalst authored Apr 30, 2021
  
  b04a3531
- automatic formatting changes · 39818482
  cylon-x authored Apr 30, 2021
  
  39818482
- Remove obsolete code · d32d1c8b
  Marvin van Aalst authored Apr 29, 2021
  
  d32d1c8b
- Removed reaction_ids · 129d5a7b
  Marvin van Aalst authored Apr 29, 2021
  
  129d5a7b
- Added knockouts to new model structure · f921a4c2
  Marvin van Aalst authored Apr 29, 2021
  
  f921a4c2
- Merge pull request #161 from LCSB-BioCore/mo-improve-check_duplicates-function · ee2a414a
  Laurent Heirendt authored May 03, 2021
```
Fix small things in `check_duplicate_annotations`
```
  ee2a414a