Commits · 0d940de253d491dbfc559eb97ecd5bffefd62dcf · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 08, 2023.

05 Apr, 2022 1 commit
- clean up MetabolicModel · 0d940de2
  Miroslav Kratochvil authored Apr 05, 2022
  
  0d940de2
04 Apr, 2022 5 commits
- materialize the reactions-to-flux mapping in accessors · 52a9c527
  Miroslav Kratochvil authored Apr 04, 2022
  
  52a9c527
- fix a blatant inconsistency in logo coloring · aa82aa54
  Miroslav Kratochvil authored Apr 04, 2022
```
Preposterous!
```
  aa82aa54
- generalize some of the CMC modifications to CoreCoupling · cf7e80cf
  Miroslav Kratochvil authored Apr 04, 2022
  
  cf7e80cf
- redo CoreModelCoupled as a more generic CoreCoupling · e1059ac2
  Miroslav Kratochvil authored Apr 04, 2022
```
This is in fact applicable to any model to just add "some extra conditions".
```
  e1059ac2
- side-commit: remove a bit of a freshly discovered trailing whitespace · 0e61a714
  Miroslav Kratochvil authored Apr 04, 2022
  
  0e61a714
03 Apr, 2022 7 commits
- fixup: flux_vec and flux_dict use solution_flux · 93978d3b
  Miroslav Kratochvil authored Apr 03, 2022
  
  93978d3b
- abstract out a function for converting optimizer solutions to fluxes · 536ae244
  Miroslav Kratochvil authored Apr 03, 2022
  
  536ae244
- Merge pull request #597 from LCSB-BioCore/mk-systematic-wrappers · 69516a6e
  Miroslav Kratochvil authored Apr 03, 2022
```
Systematic model wrappers
```
  69516a6e
- make the deprecation warning more specific · 73fff04e
  Miroslav Kratochvil authored Apr 03, 2022
  
  73fff04e
- reimagine CoreModelCoupled as a wrapper · fb9c5a8a
  Miroslav Kratochvil authored Apr 03, 2022
  
  fb9c5a8a
- add some forgotten functions to CoreModel and CoreModelCoupled · 8c48d8fd
  Miroslav Kratochvil authored Apr 03, 2022
  
  8c48d8fd
- make the model wrapping a bit more systematic · 78f0d6bf
  Miroslav Kratochvil authored Apr 03, 2022
  
  78f0d6bf
01 Apr, 2022 3 commits
- Merge pull request #595 from LCSB-BioCore/mo-depr-moment · c7228e61
  St. Elmo authored Apr 01, 2022
```
Add deprecation warning
```
  c7228e61
- format · 3e8e86f6
  St. Elmo authored Apr 01, 2022
  
  3e8e86f6
- add deprecation warning · 17852a1b
  St. Elmo authored Apr 01, 2022
  
  17852a1b
25 Mar, 2022 2 commits
- Merge pull request #594 from... · 6f3c3b9a
  Miroslav Kratochvil authored Mar 25, 2022
```
Merge pull request #594 from LCSB-BioCore/compathelper/new_version/2022-03-25-00-19-55-239-2739295806

CompatHelper: bump compat for "JuMP" to "1"
```
  6f3c3b9a
- CompatHelper: bump compat for "JuMP" to "1" · 71e50658
  github-actions[bot] authored Mar 25, 2022
  
  71e50658
23 Mar, 2022 2 commits
- Merge pull request #593 from... · 8581f9be
  Miroslav Kratochvil authored Mar 23, 2022
```
Merge pull request #593 from LCSB-BioCore/compathelper/new_version/2022-03-23-00-22-45-699-2123585176

CompatHelper: bump compat for "DistributedData" to "0.2"
```
  8581f9be
- CompatHelper: bump compat for "DistributedData" to "0.2" · 9b73f242
  github-actions[bot] authored Mar 23, 2022
  
  9b73f242
17 Mar, 2022 3 commits
- Merge pull request #590 from LCSB-BioCore/mk-looks-like-params-semicolon · 01b67794
  Miroslav Kratochvil authored Mar 17, 2022
```
Fix argument forwarding in `find_biomass_reaction_ids`
```
  01b67794
- realign one comment · 5ee72be7
  Miroslav Kratochvil authored Mar 17, 2022
  
  5ee72be7
- fix argument forwarding in find_biomass_reaction_ids · d03f4e58
  Miroslav Kratochvil authored Mar 17, 2022
  
  d03f4e58
16 Mar, 2022 1 commit
- Merge pull request #588 from LCSB-BioCore/mk-generalize-wrappers · ff8dd1bd
  Miroslav Kratochvil authored Mar 16, 2022
```
prepare a macro for inheriting the accessors for model data
```
  ff8dd1bd
13 Mar, 2022 1 commit
- Merge pull request #589 from LCSB-BioCore/tp-typos · be438eb2
  Miroslav Kratochvil authored Mar 13, 2022
```
Fixing typos
```
  be438eb2
11 Mar, 2022 1 commit
- quickstart example should work now, word missing in documentation · e9e7dd12
  Taneli Pusa authored Mar 11, 2022
  
  e9e7dd12
08 Mar, 2022 1 commit
- prepare a macro for inheriting the accessors · 45fe4368
  Miroslav Kratochvil authored Mar 08, 2022
  
  45fe4368
07 Mar, 2022 1 commit

Merge pull request #587 from... · d5cb05c8

Miroslav Kratochvil authored Mar 07, 2022

Merge pull request #587 from LCSB-BioCore/compathelper/new_version/2022-02-26-00-18-33-280-879680524

CompatHelper: bump compat for "JuMP" to "0.23"

d5cb05c8

26 Feb, 2022 1 commit
- CompatHelper: bump compat for "JuMP" to "0.23" · 86ac6db9
  github-actions[bot] authored Feb 26, 2022
  
  86ac6db9
18 Feb, 2022 3 commits
- Merge pull request #585 from LCSB-BioCore/mk-ununbanner · 14cf070e
  Laurent Heirendt authored Feb 18, 2022
```
banner again!
```
  14cf070e
- add sensible conditions to banner display · b0913113
  Miroslav Kratochvil authored Feb 18, 2022
  
  b0913113
- Revert "Revert "display banner consistently at each import"" · d1eb3e4a
  Miroslav Kratochvil authored Feb 18, 2022
```
This reverts commit 10d72b4a, which reverted
the reverted commit 71cc7c8f.
```
  d1eb3e4a
15 Feb, 2022 2 commits
- Merge pull request #583 from LCSB-BioCore/mk-bump-v123 · 4bc41a56
  Laurent Heirendt authored Feb 15, 2022
```
bump version 1.2.3
```
  4bc41a56
- bump version 1.2.3 · b11dc510
  Miroslav Kratochvil authored Feb 15, 2022
  
  b11dc510
10 Feb, 2022 6 commits
- Merge pull request #582 from LCSB-BioCore/mk-docker-from-gitlab · a160c9b7
  Miroslav Kratochvil authored Feb 10, 2022
```
docker build from gitlab
```
  a160c9b7
- fix repo name in tag · 1f7ec36e
  Miroslav Kratochvil authored Feb 10, 2022
  
  1f7ec36e
- clean up · 6883db6d
  Miroslav Kratochvil authored Feb 10, 2022
  
  6883db6d
- update readme to the new state · b17d1aa1
  Miroslav Kratochvil authored Feb 10, 2022
  
  b17d1aa1
- finalize singularity pushing · 436ef569
  Miroslav Kratochvil authored Feb 10, 2022
  
  436ef569
- fix a bad typo · 182682f0
  Miroslav Kratochvil authored Feb 10, 2022
  
  182682f0