From f76f5073caa9e4e303b2b2c00ce2af65ee74fe62 Mon Sep 17 00:00:00 2001
From: Mirek Kratochvil <miroslav.kratochvil@uni.lu>
Date: Mon, 7 Feb 2022 11:23:44 +0100
Subject: [PATCH] better
---
cobrexa.def | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/cobrexa.def b/cobrexa.def
index 54b376f8b..05c33960a 100644
--- a/cobrexa.def
+++ b/cobrexa.def
@@ -2,7 +2,10 @@ Bootstrap: library
From: cylon-x/lcsb-biocore/julia-base:latest
%setup
- GIT_DIR=`pwd`/.git GIT_WORK_TREE=${SINGULARITY_ROOTFS}/project/ git checkout -f
+ export GIT_WORK_TREE="${SINGULARITY_ROOTFS}/project/"
+ export GIT_DIR="${PWD}/.git"
+ mkdir -p "${GIT_WORK_TREE}"
+ git checkout -f
%post
export JULIA_DEPOT_PATH=/user/.julia
--
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