From f07e6532be837a73ca1e8bf9989aed6e40ddf1ac Mon Sep 17 00:00:00 2001
From: Mirek Kratochvil <exa.exa@gmail.com>
Date: Wed, 5 May 2021 17:25:35 +0200
Subject: [PATCH] clean solver
---
src/base/solver.jl | 21 +++++++++++++++++----
1 file changed, 17 insertions(+), 4 deletions(-)
diff --git a/src/base/solver.jl b/src/base/solver.jl
index e1037abe3..5e2bdee5b 100644
--- a/src/base/solver.jl
+++ b/src/base/solver.jl
@@ -1,12 +1,19 @@
+
"""
+function make_optimization_model(
+ model::MetabolicModel,
+ optimizer;
+ sense = MOI.MAX_SENSE,
+)
+
Convert CoreModel to the JuMP model, place objectives and the equality
constraint.
"""
function make_optimization_model(
- model::MM,
+ model::MetabolicModel,
optimizer;
sense = MOI.MAX_SENSE,
-) where {MM<:MetabolicModel}
+)
m, n = size(stoichiometry(model))
xl, xu = bounds(model)
@@ -21,13 +28,19 @@ function make_optimization_model(
end
"""
+ optimize_model(
+ model::MetabolicModel,
+ optimizer;
+ sense = MOI.MIN_SENSE,
+ )
+
Use JuMP to solve an instance of CoreModel
"""
function optimize_model(
- model::LM,
+ model::MetabolicModel,
optimizer;
sense = MOI.MIN_SENSE,
-) where {LM<:MetabolicModel}
+)
optimization_model = make_optimization_model(model, optimizer; sense = sense)
COBREXA.JuMP.optimize!(optimization_model)
return optimization_model
--
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