Commit d8a69f72 authored by Miroslav Kratochvil's avatar Miroslav Kratochvil
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document make_smoment_model

parent d708a3bf
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......@@ -3,12 +3,24 @@
make_smoment_model(
model::MetabolicModel;
reaction_isozymes::Function,
gene_product_capacity_required::Function,
total_enzyme_capacity,
gene_product_molar_mass::Function,
total_enzyme_capacity::Float64,
)
Construct an [`SMomentModel`](@ref) model using the inner `model` and a map of
isozymes.
Construct a model with a structure given by sMOMENT algorithm; returns a
[`SMomentModel`](@ref) (see the documentation for details.
`reaction_isozymes` parameter is a function that returns a single isozyme for
each reaction, or `nothing` if the reaction is not enzymatic. If the reaction
has multiple isozymes, use [`smoment_isozyme_score`](@ref) to select the "best"
one, as recommended by the sMOMENT approach.
`gene_product_molar_mass` parameter is a function that returns a molar mass of
each gene product (relative to `total_enzyme_capacity` and the specified
kcats), as specified by sMOMENT.
`total_enzyme_capacity` is the maximum "enzyme capacity" consumption of the
model.
"""
function make_smoment_model(
model::MetabolicModel;
......
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