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Unverified Commit d5afd324 authored by St. Elmo's avatar St. Elmo
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update docstring

parent 1838e639
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src/reconstruction/community.jl
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......@@ -225,8 +225,9 @@ unclear.
m1 = load_model(core_model_path)
m2 = load_model(CoreModel, core_model_path)
exchange_rxn_ids = filter(looks_like_exchange_reaction, boundary_rxn_ids)
exchange_met_ids = filter(endswith("_e"), boundary_met_ids)
# need to list ALL the exchanges that will form part of the entire model
exchange_rxn_ids = filter(looks_like_exchange_reaction, reactions(m1))
exchange_met_ids = [first(keys(reaction_stoichiometry(m1, ex_rxn))) for ex_rxn in exchange_rxn_ids]
biomass_ids = ["BIOMASS_Ecoli_core_w_GAM", "BIOMASS_Ecoli_core_w_GAM"]
......
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