Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
Menu
Open sidebar
LCSB-BioCore
COBREXA.jl
Commits
c5ccab9d
Unverified
Commit
c5ccab9d
authored
Apr 08, 2022
by
St. Elmo
Browse files
format
parent
536e6796
Pipeline
#54791
passed with stages
in 11 minutes and 41 seconds
Changes
2
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
src/base/constants.jl
View file @
c5ccab9d
...
...
@@ -27,9 +27,8 @@ const _constants = (
metformulas
=
[
"metFormula"
,
"metFormulas"
],
metcharges
=
[
"metCharge"
,
"metCharges"
],
metcompartments
=
[
"metCompartment"
,
"metCompartments"
],
rxnnames
=
[
"rxnNames"
,],
metnames
=
[
"metNames"
,],
rxnnames
=
[
"rxnNames"
],
metnames
=
[
"metNames"
],
),
gene_annotation_checks
=
(
"ncbigene"
,
...
...
src/base/types/MATModel.jl
View file @
c5ccab9d
...
...
@@ -252,13 +252,17 @@ end
Extract reaction name from `rxnNames`.
"""
reaction_name
(
m
::
MATModel
,
rid
::
String
)
=
_maybemap
(
x
->
x
[
findfirst
(
==
(
rid
),
reactions
(
m
))],
gets
(
m
.
mat
,
nothing
,
_constants
.
keynames
.
rxnnames
))
reaction_name
(
m
::
MATModel
,
rid
::
String
)
=
_maybemap
(
x
->
x
[
findfirst
(
==
(
rid
),
reactions
(
m
))],
gets
(
m
.
mat
,
nothing
,
_constants
.
keynames
.
rxnnames
),
)
"""
metabolite_name(m::MATModel, mid::String)
Extract metabolite name from `metNames`.
"""
metabolite_name
(
m
::
MATModel
,
mid
::
String
)
=
_maybemap
(
x
->
x
[
findfirst
(
==
(
mid
),
metabolites
(
m
))],
gets
(
m
.
mat
,
nothing
,
_constants
.
keynames
.
metnames
))
metabolite_name
(
m
::
MATModel
,
mid
::
String
)
=
_maybemap
(
x
->
x
[
findfirst
(
==
(
mid
),
metabolites
(
m
))],
gets
(
m
.
mat
,
nothing
,
_constants
.
keynames
.
metnames
),
)
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment