From 7a4e5ee197f68296b472704b64c51d98a1e0d313 Mon Sep 17 00:00:00 2001
From: Mirek Kratochvil <miroslav.kratochvil@uni.lu>
Date: Mon, 7 Feb 2022 13:02:03 +0100
Subject: [PATCH] migrate to a better container
---
.github/workflows/apptainer.yml | 47 ++++++++-------------------------
1 file changed, 11 insertions(+), 36 deletions(-)
diff --git a/.github/workflows/apptainer.yml b/.github/workflows/apptainer.yml
index 828498f63..6b5ee08b8 100644
--- a/.github/workflows/apptainer.yml
+++ b/.github/workflows/apptainer.yml
@@ -7,49 +7,24 @@ on:
jobs:
build:
- name: build
- runs-on: ubuntu-18.04
- strategy:
- matrix:
- singularity_version:
- - '3.5.3'
+ runs-on: ubuntu-20.04
container:
- image: quay.io/singularity/singularity:v${{ matrix.singularity_version }}
+ image: sysmso/singularity-ci
options: --privileged
steps:
- - name: Check out code for the container build
+ - name: check out code
uses: actions/checkout@v1
- - name: Build Container
+ - name: build .sif file
run: |
- ls
alias apptainer=singularity
apptainer build cobrexa.sif cobrexa.def
- deploy:
- runs-on: ubuntu-18.04
- strategy:
- matrix:
- singularity_version:
- - '3.5.3'
- container:
- image: quay.io/singularity/singularity:v${{ matrix.singularity_version }}
- options: --privileged
- steps:
- - name: Install sregistry dependencies
+ - name: push to registry
+ env:
+ SYLABS_IO_TOKEN: ${{ secrets.SYLABS_IO_TOKEN }}
run: |
- sudo apt-get update && sudo apt-get install -y \
- build-essential \
- libssl-dev \
- uuid-dev \
- libgpgme11-dev \
- squashfs-tools \
- libseccomp-dev \
- pkg-config \
- python-dev python python3-pip
-
- - name: Deploy Container
- run: |
- sudo pip3 install sregistry
- alias aregistry=sregistry
- SREGISTRY_CLIENT=registry aregistry push --name cylon-x/lcsb-biocore cobrexa.sif
+ alias apptainer=singularity
+ echo "$SREGISTRY_TOKEN" > apptainer-token
+ apptainer remote login --tokenfile apptainer-token
+ apptainer push cobrexa.sif library://cylon-x/lcsb-biocore/cobrexa:latest
--
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