Unverified Commit 78eb5bd4 authored by Miroslav Kratochvil's avatar Miroslav Kratochvil Committed by GitHub
Browse files

Merge pull request #619 from LCSB-BioCore/mk-bump-131

bemp version 1.3.1
parents 3b355fb1 6184ca1d
Pipeline #56588 passed with stages
in 32 minutes and 10 seconds
name = "COBREXA" name = "COBREXA"
uuid = "babc4406-5200-4a30-9033-bf5ae714c842" uuid = "babc4406-5200-4a30-9033-bf5ae714c842"
authors = ["The developers of COBREXA.jl"] authors = ["The developers of COBREXA.jl"]
version = "1.3.0" version = "1.3.1"
[deps] [deps]
Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"
......
...@@ -97,8 +97,8 @@ end ...@@ -97,8 +97,8 @@ end
objective(model::GeckoModel) objective(model::GeckoModel)
Return the objective of the [`GeckoModel`](@ref). Note, the objective is with Return the objective of the [`GeckoModel`](@ref). Note, the objective is with
respect to the internal variables, i.e. [`reactions(model)`](@ref), which are respect to the internal variables, i.e. [`reactions(model)`](@ref), which are
the unidirectional reactions and the genes involved in enzymatic reactions that the unidirectional reactions and the genes involved in enzymatic reactions that
have kinetic data. have kinetic data.
""" """
objective(model::GeckoModel) = model.objective objective(model::GeckoModel) = model.objective
......
...@@ -51,7 +51,7 @@ ...@@ -51,7 +51,7 @@
@test isapprox(prot_mass, total_gene_product_mass, atol = TEST_TOLERANCE) @test isapprox(prot_mass, total_gene_product_mass, atol = TEST_TOLERANCE)
@test isapprox(prot_mass, mass_groups["uncategorized"], atol = TEST_TOLERANCE) @test isapprox(prot_mass, mass_groups["uncategorized"], atol = TEST_TOLERANCE)
# test enzyme objective # test enzyme objective
growth_lb = rxn_fluxes["BIOMASS_Ecoli_core_w_GAM"] * 0.9 growth_lb = rxn_fluxes["BIOMASS_Ecoli_core_w_GAM"] * 0.9
opt_model = flux_balance_analysis( opt_model = flux_balance_analysis(
gm, gm,
......
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