From 78d81acdd1cad00a45e76d35ed7dc5374e28f3de Mon Sep 17 00:00:00 2001
From: "St. Elmo" <stelmozors@gmail.com>
Date: Tue, 18 May 2021 11:03:26 +0200
Subject: [PATCH] strange behaviour
---
src/analysis/sampling/warmup.jl | 17 +++++++----------
1 file changed, 7 insertions(+), 10 deletions(-)
diff --git a/src/analysis/sampling/warmup.jl b/src/analysis/sampling/warmup.jl
index 0813101a0..222348b09 100644
--- a/src/analysis/sampling/warmup.jl
+++ b/src/analysis/sampling/warmup.jl
@@ -14,40 +14,37 @@ function warmup(
optimizer;
warmup_points::Vector{Int},
modifications = [],
- workers = [myid()],
+ workerids = [myid()],
)
# create optimization problem, apply constraints, load on all workers
save_model = :(
begin
optmodel = $COBREXA.make_optimization_model($model, $optimizer)
- for mod in $modifications
- mod($model, optmodel)
- end
optmodel
end
)
- map(fetch, save_at.(workers, :cobrexa_hit_and_run_warmup_model, Ref(save_model)))
+ map(fetch, save_at.(workerids, :cobrexa_sampling_warmup_optmodel, Ref(save_model)))
ret = m -> value.(m[:x]) # get all the fluxes
fluxes = dpmap(
rid -> :($COBREXA._FVA_optimize_reaction(
- cobrexa_hit_and_run_warmup_model,
+ cobrexa_sampling_warmup_optmodel,
$rid,
$ret,
)),
- CachingPool(workers),
+ CachingPool(workerids),
[-warmup_points warmup_points],
)
# get constraints from one of the workers
lbs, ubs = get_val_from(
- workers[1],
- :(COBREXA.get_bound_vectors(cobrexa_hit_and_run_warmup_model)),
+ workerids[1],
+ :($COBREXA.get_bound_vectors(cobrexa_sampling_warmup_optmodel)),
)
# free the data on workers
- map(fetch, remove_from.(workers, :cobrexa_hit_and_run_warmup_model))
+ map(fetch, remove_from.(workerids, :cobrexa_sampling_warmup_optmodel))
return fluxes, lbs, ubs
end
--
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