remove max-iter

docs/src/notebooks/2_finding_balance.jl

@@ -156,7 +156,6 @@ dict_soln = parsimonious_flux_balance_analysis_dict(
         silence, # silence the optimizer (OSQP is very verbose by default)
         change_constraint("R_EX_glc__D_e"; lb = -12, ub = -12),
         change_optimizer_attribute("polish", true),
-        change_optimizer_attribute("max-iter", 10_000),
     ],
 )
 
@@ -178,7 +177,6 @@ vec_soln = parsimonious_flux_balance_analysis_vec(
     qp_modifications = [
         change_optimizer(OSQP.Optimizer), # now switch to OSQP (Tulip wouldn't be able to finish the computation)
         change_optimizer_attribute("polish", true), # get an accurate solution, see OSQP's documentation
-        change_optimizer_attribute("max-iter", 10_000),
         silence, # and make it quiet.
     ],
 )
@@ -194,7 +192,6 @@ reference_fluxes = parsimonious_flux_balance_analysis_dict( # reference distribu
     modifications = [
         silence,
         change_optimizer_attribute("polish", true),
-        change_optimizer_attribute("max-iter", 10_000),
     ],
 )
 
@@ -205,7 +202,6 @@ moma = minimize_metabolic_adjustment_analysis_dict(
     modifications = [
         silence,
         change_optimizer_attribute("polish", true),
-        change_optimizer_attribute("max-iter", 10_000),
         change_constraint("R_CYTBD"; lb = 0.0, ub = 0.0), # find flux distribution closest to the CYTBD knockout
     ],
 )

test/analysis/minimize_metabolic_adjustment.jl

@@ -10,7 +10,6 @@
         modifications = [
             silence,
             change_optimizer_attribute("polish", true),
-            change_optimizer_attribute("max-iter", 100_000),
         ],
     )
 

test/analysis/parsimonious_flux_balance_analysis.jl

@@ -11,7 +11,6 @@
         qp_modifications = [
             change_optimizer(OSQP.Optimizer),
             change_optimizer_attribute("polish", true),
-            change_optimizer_attribute("max-iter", 10_000),
             silence,
         ],
     )