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LCSB-BioCore
COBREXA.jl
Commits
16eb051f
Unverified
Commit
16eb051f
authored
May 05, 2021
by
Miroslav Kratochvil
Browse files
fix missed refs
parent
9f174fdf
Changes
2
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src/analysis/flux_variability_analysis.jl
View file @
16eb051f
...
@@ -24,8 +24,8 @@ FBA problem (see [`flux_balance_analysis`](@ref)).
...
@@ -24,8 +24,8 @@ FBA problem (see [`flux_balance_analysis`](@ref)).
The `bounds` is a user-supplied function that specifies the objective bounds
The `bounds` is a user-supplied function that specifies the objective bounds
for the variability optimizations, by default it restricts the flux objective
for the variability optimizations, by default it restricts the flux objective
value to the precise optimum reached in FBA. It can return `-Inf` and `Inf` in
value to the precise optimum reached in FBA. It can return `-Inf` and `Inf` in
first and second pair to remove the limit. Use [`gamma_bound`](@ref) and
first and second pair to remove the limit. Use [`gamma_bound
s
`](@ref) and
[`o
ptimum
_bound`](@ref) for simple bounds.
[`o
bjective
_bound
s
`](@ref) for simple bounds.
`optimizer` must be set to a `JuMP`-compatible optimizer. The computation of
`optimizer` must be set to a `JuMP`-compatible optimizer. The computation of
the individual optimization problems is transparently distributed to `workers`
the individual optimization problems is transparently distributed to `workers`
...
...
src/analysis/parsimonious_flux_balance_analysis.jl
View file @
16eb051f
"""
"""
function
parsimonious_flux_balance_analysis(
parsimonious_flux_balance_analysis(
model::MetabolicModel,
model::MetabolicModel,
optimizer;
optimizer;
modifications = [],
modifications = [],
...
...
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