diff --git a/docs/src/advanced/1_modifications.md b/docs/src/advanced/1_modifications.md
new file mode 100644
index 0000000000000000000000000000000000000000..d87ac56b5734c76e9afc0acdacee7167007dfcda
--- /dev/null
+++ b/docs/src/advanced/1_modifications.md
@@ -0,0 +1,2 @@
+
+# Screening with modifications
diff --git a/docs/src/advanced/2_custom_model.md b/docs/src/advanced/2_custom_model.md
new file mode 100644
index 0000000000000000000000000000000000000000..88b6d7b26f4a330651c3d92720d81e89e4d23204
--- /dev/null
+++ b/docs/src/advanced/2_custom_model.md
@@ -0,0 +1,2 @@
+
+# Custom models
diff --git a/docs/src/advanced/3_custom_models_on_hpc.md b/docs/src/advanced/3_custom_models_on_hpc.md
new file mode 100644
index 0000000000000000000000000000000000000000..ed3d0ab14a8bec093debcab5723ac7c29a2ccaab
--- /dev/null
+++ b/docs/src/advanced/3_custom_models_on_hpc.md
@@ -0,0 +1,2 @@
+
+# Using customized models on HPC
diff --git a/docs/src/advanced/4_advanced_screening.md b/docs/src/advanced/4_advanced_screening.md
new file mode 100644
index 0000000000000000000000000000000000000000..1f60f341de55452b881ed89f3cea2c4e8f590e4b
--- /dev/null
+++ b/docs/src/advanced/4_advanced_screening.md
@@ -0,0 +1,4 @@
+
+# Advanced model screening
+
+## Example: Gene knockouts
diff --git a/docs/src/advanced/5_debugging.md b/docs/src/advanced/5_debugging.md
new file mode 100644
index 0000000000000000000000000000000000000000..417d487e7e2dfb5d8ed8f63eeacb50c15f2882ce
--- /dev/null
+++ b/docs/src/advanced/5_debugging.md
@@ -0,0 +1,2 @@
+
+# Tracing and debugging
diff --git a/docs/src/tutorials/basic_analysis.md b/docs/src/old-tutorials/basic_analysis.md
similarity index 100%
rename from docs/src/tutorials/basic_analysis.md
rename to docs/src/old-tutorials/basic_analysis.md
diff --git a/docs/src/tutorials/io.md b/docs/src/old-tutorials/io.md
similarity index 100%
rename from docs/src/tutorials/io.md
rename to docs/src/old-tutorials/io.md
diff --git a/docs/src/tutorials/model_construction.md b/docs/src/old-tutorials/model_construction.md
similarity index 100%
rename from docs/src/tutorials/model_construction.md
rename to docs/src/old-tutorials/model_construction.md
diff --git a/docs/src/tutorials/model_structure.md b/docs/src/old-tutorials/model_structure.md
similarity index 100%
rename from docs/src/tutorials/model_structure.md
rename to docs/src/old-tutorials/model_structure.md
diff --git a/docs/src/tutorials/sampling_tools.md b/docs/src/old-tutorials/sampling_tools.md
similarity index 100%
rename from docs/src/tutorials/sampling_tools.md
rename to docs/src/old-tutorials/sampling_tools.md
diff --git a/docs/src/tutorials/1_loading.md b/docs/src/tutorials/1_loading.md
new file mode 100644
index 0000000000000000000000000000000000000000..644f6e3981fa786bb7d837b4a7d8c85ca3be4a7e
--- /dev/null
+++ b/docs/src/tutorials/1_loading.md
@@ -0,0 +1,2 @@
+
+# Loading and converting models
diff --git a/docs/src/tutorials/2_analysis.md b/docs/src/tutorials/2_analysis.md
new file mode 100644
index 0000000000000000000000000000000000000000..6bfe73a6b6a77573b188f440e63c628b6819791d
--- /dev/null
+++ b/docs/src/tutorials/2_analysis.md
@@ -0,0 +1,2 @@
+
+# Basic flux analysis
diff --git a/docs/src/tutorials/3_hpc.md b/docs/src/tutorials/3_hpc.md
new file mode 100644
index 0000000000000000000000000000000000000000..49d882cba69e0ff8c52304c7b50db981f99a3f0a
--- /dev/null
+++ b/docs/src/tutorials/3_hpc.md
@@ -0,0 +1,2 @@
+
+# Running the analyses on HPC
diff --git a/docs/src/tutorials/4_modifying.md b/docs/src/tutorials/4_modifying.md
new file mode 100644
index 0000000000000000000000000000000000000000..b6340f834ba7978b4810a73fabad327034916d98
--- /dev/null
+++ b/docs/src/tutorials/4_modifying.md
@@ -0,0 +1,6 @@
+
+# Modifying and saving the models
+
+## Exporting the models in native formats
+
+## Using `Serialization`