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using Documenter, COBREXA
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# download core model
download("http://bigg.ucsd.edu/static/models/e_coli_core.json", "e_coli_core.json")

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makedocs(modules = [COBREXA],
        clean = false,
        sitename = "COBREXA.jl",
        format = Documenter.HTML(
            # Use clean URLs, unless built as a "local" build
            prettyurls = !("local" in ARGS),
            assets = ["assets/favicon.ico"],
            highlights = ["yaml"],
        ),
        authors = "The developers of COBREXA.jl",
        linkcheck = !("skiplinks" in ARGS),
        pages = [
                "Home" => "index.md",
                "Functions" => "functions.md",
                "How to contribute" => "howToContribute.md",
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                "Model Structure" => "model_structure.md",
                "Model IO" => "io.md",
                "Model Construction" => "model_construction.md",
                "Optimization Based Analysis Tools" => "basic_analysis.md",
                "Sampling Tools" => "sampling_tools.md",
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                ],
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        )

# delete core model
rm("e_coli_core.json")