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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Contents · COBREXA.jl</title><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.0/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.0/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.15.0/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.11.1/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../siteinfo.js"></script><script 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class="docs-menu"><li><a class="tocitem" href="../">Home</a></li><li><span class="tocitem">User guide</span><ul><li><input class="collapse-toggle" id="menuitem-2-1" type="checkbox"/><label class="tocitem" for="menuitem-2-1"><span class="docs-label">Quickstart tutorials</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../tutorials/">All tutorials</a></li><li><a class="tocitem" href="../tutorials/1_loading/">Loading and converting model data</a></li><li><a class="tocitem" href="../tutorials/2_analysis/">Basic analysis of constraint-based models</a></li><li><a class="tocitem" href="../tutorials/3_hpc/">Distributed processing and HPC environments</a></li><li><a class="tocitem" href="../tutorials/4_modifying/">Modifying and saving the models</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-2" type="checkbox"/><label class="tocitem" for="menuitem-2-2"><span class="docs-label">Advanced tutorials</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../advanced/">All advanced tutorials</a></li><li><a class="tocitem" href="../advanced/1_variants/">Exploring many model variants</a></li><li><a class="tocitem" href="../advanced/2_custom_model/">Working with custom models</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-3" type="checkbox"/><label class="tocitem" for="menuitem-2-3"><span class="docs-label">Examples and notebooks</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../notebooks/">All notebooks</a></li><li><a class="tocitem" href="../notebooks/1_loading_converting_saving/">Loading, converting, and saving models</a></li><li><a class="tocitem" href="../notebooks/2_finding_balance/">Finding balance and variability of constraint-based models</a></li><li><a class="tocitem" href="../notebooks/3_basic_stdmodel_usage/">Basic usage of <code>StandardModel</code></a></li><li><a class="tocitem" href="../notebooks/4_basic_core_coupled_usage/">Basic usage of <code>CoreModel</code> and <code>CoreModelCoupled</code></a></li><li><a class="tocitem" href="../notebooks/5_basic_stdmodel_construction/">Model construction and modification</a></li><li><a class="tocitem" href="../notebooks/6_screening/">Exploring model variants with <code>screen</code></a></li><li><a class="tocitem" href="../notebooks/7_community_model/">Building and analysing a small community model</a></li><li><a class="tocitem" href="../notebooks/8_custom_model/">Using a custom model data structure</a></li><li><a class="tocitem" href="../notebooks/9_max_min_driving_force_analysis/">Maximum-minimum driving force analysis</a></li></ul></li></ul></li><li><span class="tocitem">Types and functions</span><ul><li class="is-active"><a class="tocitem" href>Contents</a></li><li><a class="tocitem" href="analysis/">Analysis functions</a></li><li><a class="tocitem" href="base/">Base functions</a></li><li><a class="tocitem" href="io/">Input and output</a></li><li><a class="tocitem" href="reconstruction/">Model construction functions</a></li><li><a class="tocitem" href="types/">Types</a></li><li><a class="tocitem" href="utils/">Utilities</a></li></ul></li><li><a class="tocitem" href="../howToContribute/">How to contribute</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><nav class="breadcrumb"><ul class="is-hidden-mobile"><li><a class="is-disabled">Types and functions</a></li><li class="is-active"><a href>Contents</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Contents</a></li></ul></nav><div class="docs-right"><a class="docs-edit-link" href="https://github.com/lcsb-biocore/COBREXA.jl/blob/master/docs/src/functions.md" title="Edit on GitHub"><span class="docs-icon fab"></span><span class="docs-label is-hidden-touch">Edit on GitHub</span></a><a class="docs-settings-button fas fa-cog" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-sidebar-button fa fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a></div></header><article class="content" id="documenter-page"><h1 id="Types-and-functions"><a class="docs-heading-anchor" href="#Types-and-functions">Types and functions</a><a id="Types-and-functions-1"></a><a class="docs-heading-anchor-permalink" href="#Types-and-functions" title="Permalink"></a></h1><ul><li><a href="analysis/#Analysis-functions">Analysis functions</a></li><ul><li><a href="analysis/#Common-analysis-functions">Common analysis functions</a></li><li><a href="analysis/#Sampling">Sampling</a></li><li><a href="analysis/#Analysis-modifiers">Analysis modifiers</a></li></ul><li><a href="base/#Base-functions">Base functions</a></li><li><a href="io/#Input-and-output">Input and output</a></li><ul><li><a href="io/#File-I/O-and-serialization">File I/O and serialization</a></li><li><a href="io/#Pretty-printing">Pretty printing</a></li></ul><li><a href="reconstruction/#Model-construction-functions">Model construction functions</a></li><ul><li><a href="reconstruction/#Functions-for-changing-the-models">Functions for changing the models</a></li><li><a href="reconstruction/#Variant-specifiers">Variant specifiers</a></li></ul><li><a href="types/#Types">Types</a></li><ul><li><a href="types/#Base-types">Base types</a></li><li><a href="types/#Model-types-and-contents">Model types and contents</a></li></ul><li><a href="utils/#Utilities">Utilities</a></li><ul><li><a href="utils/#Helper-functions">Helper functions</a></li><li><a href="utils/#Macro-generated-functions-and-internal-helpers">Macro-generated functions and internal helpers</a></li><li><a href="utils/#Logging-and-debugging-helpers">Logging and debugging helpers</a></li></ul></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../notebooks/9_max_min_driving_force_analysis/">« Maximum-minimum driving force analysis</a><a class="docs-footer-nextpage" href="analysis/">Analysis functions »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option 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