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... | @@ -9,11 +9,11 @@ Pathogenic microorganisms cause disease by invading, colonizing and damaging the |
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PathoFact combines the prediction of these pathogenicity factors with the identification of mobile genetic elements. This provides further depth to the analysis by considering the genomic context of the pertinent genes. Furthermore, PathoFact’s modules for virulence factors, toxins and antimicrobial resistance genes can be applied independently, thereby making it a flexible and versatile tool.
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PathoFact combines the prediction of these pathogenicity factors with the identification of mobile genetic elements. This provides further depth to the analysis by considering the genomic context of the pertinent genes. Furthermore, PathoFact’s modules for virulence factors, toxins and antimicrobial resistance genes can be applied independently, thereby making it a flexible and versatile tool.
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# Contents
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# Contents
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- [Requirements, Dependencies and Installation](Home/Requirements and installation)
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- [Installation: Requirements and Dependencies](Home/Requirements and installation)
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- [Input](Home/Input)
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- [Input](Home/Input)
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- [Run Pathofact](Home/Run PathoFact)
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- [Usage](Home/Run PathoFact)
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- [Test module](Home/Test module)
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- [Test module](Home/Test module)
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- [Output report](Home/Output report)
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- [Reporting](Home/Output report)
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