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### Test module
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To test for the correct installation of the pipeline the testmodule can be run:
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Include the required path to the SingalP v5.0 installation to the config file `test/test_config.yaml`
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```
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# activate env
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conda activate PathoFact
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# run the pipeline
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snakemake -s test/Snakefile --use-conda --reason --cores 1 -p
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``` |
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\ No newline at end of file |