... | @@ -40,7 +40,21 @@ Within the report of the virulence factors the first columns contain information |
... | @@ -40,7 +40,21 @@ Within the report of the virulence factors the first columns contain information |
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| 2_1 | 0000000003 | negative | negative | non_pathogenic | N | - |
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| 2_1 | 0000000003 | negative | negative | non_pathogenic | N | - |
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## Toxins
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For the prediction of toxins in particular two different reports are generated. The first re
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| Toxin confidence level | HMM prediction | SignalP |
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|:---:| :---:| :---:|
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|1: Secreted Toxin| +| +|
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|2: Non-secreted Toxin| +| - |
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| ORF | ORF_ID | Number_of_hits | Toxin_prediction | Signal_peptide | Toxin_confidence_level |
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|:---:| :---:| :---:| :---:| :---:| :---:|
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| 1_1 | 0000000001 | 2 | pathogenic | Y | 1: Secreted Toxin |
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| 1_2 | 0000000002 | 1 | pathogenic | N | 2: Non-secreted Toxin |
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| 2_1 | 0000000003 | 0 | non_pathogenic | N | - |
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| ORF_ID | ORF | HMM_Name | Score | Significance_evalue | NAME | Alternative_name | Database | Description |
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|:---:| :---:| :---:| :---:| :---:| :---:|:---:|:---:|:---:|
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