Issues · Laura Denies / PathoFact

New issue

virulence classifier: class probability cutoff?

#67 · created Apr 15, 2021 by Nick Youngblut
- 0
updated Apr 15, 2021
Update SignalP

#35 · created May 05, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
Update deeparg installation

#51 · created Jun 12, 2020 by Laura Denies bug
- CLOSED
- 0
updated Jun 18, 2020
Unclassified MGE

#70 · created May 07, 2021 by ntromas
- CLOSED
- 6
updated Aug 28, 2021
The unknown task termination of multiple input genomes

#71 · created May 11, 2021 by neptuneyt
- 4
updated Sep 06, 2021
Test workflow and common run fails at RGI step at biopython

#72 · created May 19, 2021 by Michal Zeman dependencies documentation
- CLOSED
- 20
updated Sep 06, 2021
testing module fails with DeepARG

#64 · created Apr 02, 2021 by mhmism
- CLOSED
- 3
updated Apr 15, 2022
testing module fails deepARG- how to update deepARG within PathoFact?

#88 · created Apr 15, 2022 by RahilRyder
- 0
updated Apr 15, 2022
SyntaxError in line 85, Preprocessing.smk

#55 · created Dec 24, 2020 by Ghost User
- CLOSED
- 3
updated Jan 20, 2021
spring-clean: VirSorter 4 of 4 tasks completed

#21 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: test data set 3 of 3 tasks completed

#30 · created Apr 23, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 1
updated Apr 29, 2020
spring-clean: snakemake rules: use names in shell/run/script

#29 · created Apr 21, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 0
updated Apr 30, 2020
spring-clean: snakemake rules indentation

#26 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 2
updated Apr 21, 2020
spring-clean: rm `configfile` from snakemake rule files

#25 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 1
- 0
updated Apr 21, 2020
spring-clean: PlasFlow 4 of 4 tasks completed

#20 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: mv conda_environments and YAML files 3 of 3 tasks completed

#14 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: main YAML file

#16 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: logging

#28 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 0
updated Apr 21, 2020
spring-clean: HMMER 3 of 3 tasks completed

#22 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 3
updated Apr 21, 2020
spring-clean: give snakemake files an extension

#18 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 24, 2020