Issues · Laura Denies / PathoFact

New issue

virulence classifier: class probability cutoff?

#67 · created Apr 15, 2021 by Nick Youngblut
- 0
updated Apr 15, 2021
The unknown task termination of multiple input genomes

#71 · created May 11, 2021 by neptuneyt
- 4
updated Sep 06, 2021
testing module fails deepARG- how to update deepARG within PathoFact?

#88 · created Apr 15, 2022 by RahilRyder
- 0
updated Apr 15, 2022
Snakemake: use && or || to concat CMDs in rules

#10 · created Apr 16, 2020 by Valentina Galata enhancement
- 0
updated Jun 08, 2020
Skip prodigal and use curated annotation

#54 · created Dec 23, 2020 by avilaHugo enhancement
- 1
updated Sep 01, 2021
Question about execution Sna

#80 · created Sep 25, 2021 by adolfoisla incident
- 1
updated Oct 29, 2021
Percent identity and query coverage for toxin hits

#68 · created Apr 27, 2021 by Vadim (Dani) Dubinsky
- 0
updated Apr 27, 2021
PathoFact block in the DVF step

#74 · created Jun 21, 2021 by neptuneyt
- 1
updated Jul 06, 2021
ownHMM_library.R script fails with empty input files

#78 · created Sep 08, 2021 by Susheel Busi
- 1
- 6
updated Nov 12, 2021
intallation with docker/singularity

#42 · created May 27, 2020 by soilmicrobiome discussion enhancement
- 0
updated Jun 08, 2020
Input: allow to provide a protein FAA file

#59 · created Mar 05, 2021 by Valentina Galata IMP enhancement
- 1
updated Nov 10, 2021
hmm.R

#76 · created Aug 03, 2021 by Matthew Macowan
- 1
updated Sep 06, 2021
Finished NCBI genomes and PathoFact

#83 · created Oct 30, 2021 by vkisand
- 3
updated Nov 04, 2021
Feature request: include ARO in output reports

#77 · created Aug 09, 2021 by Benjamin Wingfield enhancement
- 1
updated Sep 01, 2021
error while running run_PLASMID

#61 · created Mar 17, 2021 by sabina-llr
- 6
updated Sep 06, 2021
Error in rule SignalPN_aggregate

#89 · created Apr 30, 2022 by GaoyangLuo
- 1
- 1
updated May 01, 2022
Error in rule SignalPN_aggregate

#87 · created Apr 03, 2022 by Ella Kantor
- 1
updated Apr 30, 2022
Error in rule run_VirSorter:

#84 · created Jan 25, 2022 by yuzie0314
- 9
updated Jan 27, 2022
Error in rule Plasmid_aggregate

#82 · created Oct 19, 2021 by Ella Kantor
- 4
updated Nov 02, 2021
CondaVerificationError after installation

#75 · created Jul 09, 2021 by Andrew
- 1
updated Sep 01, 2021