Issues · Laura Denies / PathoFact

New issue

Error in Combine_Toxin_SignalP.smk file

#66 · created Apr 06, 2021 by Vadim (Dani) Dubinsky
- CLOSED
- 1
updated Apr 12, 2021
testing module fails with DeepARG

#64 · created Apr 02, 2021 by mhmism
- CLOSED
- 2
updated Apr 06, 2021
AMR.R

#62 · created Mar 18, 2021 by ntromas bug
- CLOSED
- 9
updated Apr 12, 2021
how to deal if i am not allowed to create conda environment on my server?

#58 · created Mar 04, 2021 by AA8898
- CLOSED
- 0
updated Mar 08, 2021
DeepVirFinder: Resource unavailable

#56 · created Jan 21, 2021 by Susheel Busi
- CLOSED
- 1
updated Jan 21, 2021
SyntaxError in line 85, Preprocessing.smk

#55 · created Dec 24, 2020 by Ghost User
- CLOSED
- 3
updated Jan 20, 2021
Signal IP version

#52 · created Aug 24, 2020 by Adrian-Howard
- CLOSED
- 1
updated Jan 12, 2021
Update deeparg installation

#51 · created Jun 12, 2020 by Laura Denies bug
- CLOSED
- 0
updated Jun 18, 2020
Add Prodigal to Pipeline

#50 · created Jun 10, 2020 by Laura Denies
- CLOSED
- 0
updated Jun 11, 2020
Replace SeqKit

#49 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jun 11, 2020
Output format 2 of 2 tasks completed

#48 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
More cores used than specified

#47 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jul 09, 2021
Dependency gcc/g++

#46 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies
- CLOSED
- 0
updated Jan 12, 2021
Reduce output size 2 of 4 tasks completed

#45 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 clean-up enhancement
- CLOSED
- 0
updated Jun 22, 2020
DeepARG - parameters in config file

#44 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
Add RGI (AMR prediction) 5 of 5 tasks completed

#43 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
updated Jun 18, 2020
Documentation 3 of 3 tasks completed

#41 · created May 26, 2020 by Valentina Galata Paper review - Microbiome - 1 documentation
- CLOSED
- 0
updated Jan 12, 2021
PlasFlow minimal contig length from config

#40 · created May 25, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
updated Jan 12, 2021
Error if no VirSorter results in AMR_MGE.R

#39 · created May 19, 2020 by Valentina Galata Paper review - Microbiome - 1 bug
- CLOSED
- 5
updated Mar 24, 2021
size_fasta is not used by seqkit

#38 · created May 15, 2020 by Valentina Galata Paper review - Microbiome - 1 bug
- CLOSED
- 2
updated Jun 11, 2020