Issues · Laura Denies / PathoFact

New issue

only small fasta files (around 6000~7000 contigs) can work in Vir and Tox module

#73 · created May 28, 2021 by Xuanji Li
- CLOSED
- 1
updated Aug 31, 2021
Test workflow and common run fails at RGI step at biopython

#72 · created May 19, 2021 by Michal Zeman dependencies documentation
- CLOSED
- 20
updated Sep 06, 2021
Unclassified MGE

#70 · created May 07, 2021 by ntromas
- CLOSED
- 6
updated Aug 28, 2021
Config file config.yaml not found

#69 · created May 05, 2021 by Owenke247
- CLOSED
- 1
updated Aug 31, 2021
Error in Combine_Toxin_SignalP.smk file

#66 · created Apr 06, 2021 by Vadim (Dani) Dubinsky
- CLOSED
- 1
updated Apr 12, 2021
assembled contigs fa files

#65 · created Apr 02, 2021 by mhmism
- CLOSED
- 2
updated Aug 28, 2021
testing module fails with DeepARG

#64 · created Apr 02, 2021 by mhmism
- CLOSED
- 2
updated Apr 06, 2021
How estimate relative abundance?

#63 · created Mar 21, 2021 by AA8898
- CLOSED
- 8
updated Sep 10, 2021
AMR.R

#62 · created Mar 18, 2021 by ntromas bug
- CLOSED
- 9
updated Apr 12, 2021
erorr while running classifier and run_Virifinder

#60 · created Mar 05, 2021 by AA8898
- CLOSED
- 3
updated Aug 28, 2021
how to deal if i am not allowed to create conda environment on my server?

#58 · created Mar 04, 2021 by AA8898
- CLOSED
- 0
updated Mar 08, 2021
PathoFact for assembled genomes

#57 · created Jan 31, 2021 by in3ska
- CLOSED
- 4
updated Aug 28, 2021
DeepVirFinder: Resource unavailable

#56 · created Jan 21, 2021 by Susheel Busi
- CLOSED
- 1
updated Jan 21, 2021
SyntaxError in line 85, Preprocessing.smk

#55 · created Dec 24, 2020 by Ghost User
- CLOSED
- 3
updated Jan 20, 2021
Signal IP version

#52 · created Aug 24, 2020 by Adrian-Howard
- CLOSED
- 1
updated Jan 12, 2021
Update deeparg installation

#51 · created Jun 12, 2020 by Laura Denies bug
- CLOSED
- 0
updated Jun 18, 2020
Add Prodigal to Pipeline

#50 · created Jun 10, 2020 by Laura Denies
- CLOSED
- 0
updated Jun 11, 2020
Replace SeqKit

#49 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jun 11, 2020
Output format 2 of 2 tasks completed

#48 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
More cores used than specified

#47 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jul 09, 2021