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  • Laura Denies
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  • Issues

  • Open 22
  • Closed 66
  • All 88
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • PlasFlow minimal contig length from config
    #40 · created May 25, 2020 by Valentina Galata   Paper review - Microbiome - 1   enhancement
    • CLOSED
    • 1
    updated Jan 12, 2021
  • Dependency gcc/g++
    #46 · created Jun 08, 2020 by Valentina Galata   Paper review - Microbiome - 1   dependencies
    • CLOSED
    • 0
    updated Jan 12, 2021
  • Documentation   3 of 3 tasks completed
    #41 · created May 26, 2020 by Valentina Galata   Paper review - Microbiome - 1   documentation
    • CLOSED
    • 0
    updated Jan 12, 2021
  • PlasFlow threshold from config
    #37 · created May 15, 2020 by Valentina Galata   Paper review - Microbiome - 1   enhancement
    • CLOSED
    • 1
    updated Jan 12, 2021
  • DeepARG -- git lsf issue
    #3 · created Apr 14, 2020 by Valentina Galata   Paper review - Microbiome - 1   dependencies enhancement
    • CLOSED
    • 3
    updated Jan 12, 2021
  • README.md update   3 of 3 tasks completed
    #36 · created May 05, 2020 by Valentina Galata   Paper review - Microbiome - 1   documentation
    • CLOSED
    • 1
    updated Jan 12, 2021
  • Snakemake rule messages
    #27 · created Apr 20, 2020 by Valentina Galata   Paper review - Microbiome - 1   enhancement
    • CLOSED
    • 1
    • 2
    updated Aug 06, 2020
  • Reduce output size   2 of 4 tasks completed
    #45 · created Jun 08, 2020 by Valentina Galata   Paper review - Microbiome - 1   clean-up enhancement
    • CLOSED
    • 0
    updated Jun 22, 2020
  • Output format   2 of 2 tasks completed
    #48 · created Jun 08, 2020 by Valentina Galata   Paper review - Microbiome - 1   enhancement
    • CLOSED
    • 0
    updated Jun 22, 2020
  • Update SignalP
    #35 · created May 05, 2020 by Valentina Galata   Paper review - Microbiome - 1   enhancement
    • CLOSED
    • 0
    updated Jun 22, 2020
  • DeepARG - parameters in config file
    #44 · created Jun 08, 2020 by Valentina Galata   Paper review - Microbiome - 1   enhancement
    • CLOSED
    • 0
    updated Jun 22, 2020
  • Update deeparg installation
    #51 · created Jun 12, 2020 by Laura Denies   bug
    • CLOSED
    • 0
    updated Jun 18, 2020
  • Add RGI (AMR prediction)   5 of 5 tasks completed
    #43 · created Jun 08, 2020 by Valentina Galata   Paper review - Microbiome - 1   enhancement
    • CLOSED
    • 1
    updated Jun 18, 2020
  • size_fasta is not used by seqkit
    #38 · created May 15, 2020 by Valentina Galata   Paper review - Microbiome - 1   bug
    • CLOSED
    • 2
    updated Jun 11, 2020
  • Add Prodigal to Pipeline
    #50 · created Jun 10, 2020 by Laura Denies
    • CLOSED
    • 0
    updated Jun 11, 2020
  • Replace SeqKit
    #49 · created Jun 08, 2020 by Valentina Galata   Paper review - Microbiome - 1   bug dependencies
    • CLOSED
    • 1
    updated Jun 11, 2020
  • Snakemake: use && or || to concat CMDs in rules
    #10 · created Apr 16, 2020 by Valentina Galata   enhancement
    • 0
    updated Jun 08, 2020
  • intallation with docker/singularity
    #42 · created May 27, 2020 by soilmicrobiome   discussion enhancement
    • 0
    updated Jun 08, 2020
  • IMPiris: log files   2 of 4 tasks completed
    #7 · created Apr 15, 2020 by Valentina Galata   IMP
    • CLOSED
    • 1
    updated May 05, 2020
  • IMPiris: test data
    #9 · created Apr 15, 2020 by Valentina Galata   IMP
    • CLOSED
    • 1
    updated May 05, 2020
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