Issues · Laura Denies / PathoFact

New issue

PlasFlow minimal contig length from config

#40 · created May 25, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
updated Jan 12, 2021
Dependency gcc/g++

#46 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies
- CLOSED
- 0
updated Jan 12, 2021
Documentation 3 of 3 tasks completed

#41 · created May 26, 2020 by Valentina Galata Paper review - Microbiome - 1 documentation
- CLOSED
- 0
updated Jan 12, 2021
PlasFlow threshold from config

#37 · created May 15, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
updated Jan 12, 2021
DeepARG -- git lsf issue

#3 · created Apr 14, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies enhancement
- CLOSED
- 3
updated Jan 12, 2021
README.md update 3 of 3 tasks completed

#36 · created May 05, 2020 by Valentina Galata Paper review - Microbiome - 1 documentation
- CLOSED
- 1
updated Jan 12, 2021
Snakemake rule messages

#27 · created Apr 20, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
- 2
updated Aug 06, 2020
Reduce output size 2 of 4 tasks completed

#45 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 clean-up enhancement
- CLOSED
- 0
updated Jun 22, 2020
Output format 2 of 2 tasks completed

#48 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
Update SignalP

#35 · created May 05, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
DeepARG - parameters in config file

#44 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
Update deeparg installation

#51 · created Jun 12, 2020 by Laura Denies bug
- CLOSED
- 0
updated Jun 18, 2020
Add RGI (AMR prediction) 5 of 5 tasks completed

#43 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
updated Jun 18, 2020
size_fasta is not used by seqkit

#38 · created May 15, 2020 by Valentina Galata Paper review - Microbiome - 1 bug
- CLOSED
- 2
updated Jun 11, 2020
Add Prodigal to Pipeline

#50 · created Jun 10, 2020 by Laura Denies
- CLOSED
- 0
updated Jun 11, 2020
Replace SeqKit

#49 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jun 11, 2020
Snakemake: use && or || to concat CMDs in rules

#10 · created Apr 16, 2020 by Valentina Galata enhancement
- 0
updated Jun 08, 2020
intallation with docker/singularity

#42 · created May 27, 2020 by soilmicrobiome discussion enhancement
- 0
updated Jun 08, 2020
IMPiris: log files 2 of 4 tasks completed

#7 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 1
updated May 05, 2020
IMPiris: test data

#9 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 1
updated May 05, 2020