Issues · Laura Denies / PathoFact

New issue

spring-clean: clean up YAML files

#23 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 21, 2020
spring-clean: args in virulence_prediction.py and rule classifier in the vir step

#31 · created Apr 23, 2020 by Valentina Galata spring-clean bug clean-up
- CLOSED
- 1
updated Apr 23, 2020
spring-clean: all scripts in scripts/ 2 of 2 tasks completed

#15 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 0
updated Apr 23, 2020
spring-clean: add workflow parameter 2 of 2 tasks completed

#24 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 1
- 2
updated Apr 21, 2020
spring-clean: add test workflow 3 of 3 tasks completed

#33 · created Apr 24, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 0
updated Apr 30, 2020
spring-clean: add .gitignore 1 of 1 task completed

#13 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 20, 2020
Snakemake rule messages

#27 · created Apr 20, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
- 2
updated Aug 06, 2020
size_fasta is not used by seqkit

#38 · created May 15, 2020 by Valentina Galata Paper review - Microbiome - 1 bug
- CLOSED
- 2
updated Jun 11, 2020
Signal IP version

#52 · created Aug 24, 2020 by Adrian-Howard
- CLOSED
- 1
updated Jan 12, 2021
Replace SignalP

#34 · created May 05, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies enhancement
- CLOSED
- 4
updated Sep 30, 2021
Replace SeqKit

#49 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jun 11, 2020
Reduce output size 2 of 4 tasks completed

#45 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 clean-up enhancement
- CLOSED
- 0
updated Jun 22, 2020
README.md update 3 of 3 tasks completed

#36 · created May 05, 2020 by Valentina Galata Paper review - Microbiome - 1 documentation
- CLOSED
- 1
updated Jan 12, 2021
qsub: Bad UID for job execution

#86 · created Feb 28, 2022 by GaoyangLuo
- CLOSED
- 0
updated Mar 02, 2022
PlasFlow threshold from config

#37 · created May 15, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
updated Jan 12, 2021
PlasFlow minimal contig length from config

#40 · created May 25, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 1
updated Jan 12, 2021
PathoFact for metagenome assembled genomes (MAGs)

#2 · created Apr 08, 2020 by Christiane Hassenrück
- CLOSED
- 2
updated Apr 14, 2020
PathoFact for assembled genomes

#57 · created Jan 31, 2021 by in3ska
- CLOSED
- 4
updated Aug 28, 2021
Output format 2 of 2 tasks completed

#48 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 enhancement
- CLOSED
- 0
updated Jun 22, 2020
only small fasta files (around 6000~7000 contigs) can work in Vir and Tox module

#73 · created May 28, 2021 by Xuanji Li
- CLOSED
- 1
updated Aug 31, 2021