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  • Laura Denies
  • PathoFact
  • Issues

  • Open 22
  • Closed 67
  • All 89
New issue
  • Priority Created date Updated date Milestone due date Due date Popularity Label priority Manual Title Weight Blocking
  • Error in rule R_script:
    #90 · created Jun 16, 2022 by fconstancias
    • CLOSED
    • 1
    updated Jun 29, 2022
  • qsub: Bad UID for job execution
    #86 · created Feb 28, 2022 by GaoyangLuo
    • CLOSED
    • 0
    updated Mar 02, 2022
  • Error in rule splitting
    #85 · created Feb 24, 2022 by GaoyangLuo
    • CLOSED
    • 2
    updated Mar 02, 2022
  • only small fasta files (around 6000~7000 contigs) can work in Vir and Tox module
    #73 · created May 28, 2021 by Xuanji Li
    • CLOSED
    • 1
    updated Aug 31, 2021
  • Test workflow and common run fails at RGI step at biopython
    #72 · created May 19, 2021 by Michal Zeman   dependencies documentation
    • CLOSED
    • 20
    updated Sep 06, 2021
  • Unclassified MGE
    #70 · created May 07, 2021 by ntromas
    • CLOSED
    • 6
    updated Aug 28, 2021
  • Config file config.yaml not found
    #69 · created May 05, 2021 by Owenke247
    • CLOSED
    • 1
    updated Aug 31, 2021
  • Error in Combine_Toxin_SignalP.smk file
    #66 · created Apr 06, 2021 by Vadim (Dani) Dubinsky
    • CLOSED
    • 1
    updated Apr 12, 2021
  • assembled contigs fa files
    #65 · created Apr 02, 2021 by mhmism
    • CLOSED
    • 2
    updated Aug 28, 2021
  • testing module fails with DeepARG
    #64 · created Apr 02, 2021 by mhmism
    • CLOSED
    • 3
    updated Apr 15, 2022
  • How estimate relative abundance?
    #63 · created Mar 21, 2021 by AA8898
    • CLOSED
    • 8
    updated Sep 10, 2021
  • AMR.R
    #62 · created Mar 18, 2021 by ntromas   bug
    • CLOSED
    • 9
    updated Apr 12, 2021
  • erorr while running classifier and run_Virifinder
    #60 · created Mar 05, 2021 by AA8898
    • CLOSED
    • 3
    updated Aug 28, 2021
  • how to deal if i am not allowed to create conda environment on my server?
    #58 · created Mar 04, 2021 by AA8898
    • CLOSED
    • 0
    updated Mar 08, 2021
  • PathoFact for assembled genomes
    #57 · created Jan 31, 2021 by in3ska
    • CLOSED
    • 4
    updated Aug 28, 2021
  • DeepVirFinder: Resource unavailable
    #56 · created Jan 21, 2021 by Susheel Busi
    • CLOSED
    • 1
    updated Jan 21, 2021
  • SyntaxError in line 85, Preprocessing.smk
    #55 · created Dec 24, 2020 by Ghost User
    • CLOSED
    • 3
    updated Jan 20, 2021
  • Signal IP version
    #52 · created Aug 24, 2020 by Adrian-Howard
    • CLOSED
    • 1
    updated Jan 12, 2021
  • Update deeparg installation
    #51 · created Jun 12, 2020 by Laura Denies   bug
    • CLOSED
    • 0
    updated Jun 18, 2020
  • Add Prodigal to Pipeline
    #50 · created Jun 10, 2020 by Laura Denies
    • CLOSED
    • 0
    updated Jun 11, 2020
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