Issues · Laura Denies / PathoFact

New issue

Missing file

#1 · created Jan 23, 2020 by Susheel Busi
- CLOSED
- 2
updated Feb 03, 2020
PathoFact for metagenome assembled genomes (MAGs)

#2 · created Apr 08, 2020 by Christiane Hassenrück
- CLOSED
- 2
updated Apr 14, 2020
DeepARG -- git lsf issue

#3 · created Apr 14, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies enhancement
- CLOSED
- 3
updated Jan 12, 2021
IMPiris: new conda dependencies 4 of 4 tasks completed

#4 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 1
updated Apr 17, 2020
IMPiris: Add workflow option to config

#5 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 0
updated Apr 17, 2020
IMPiris: escape tabs in rule CMDs

#6 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 0
updated Apr 17, 2020
IMPiris: log files 2 of 4 tasks completed

#7 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 1
updated May 05, 2020
IMPiris: modify rule messages

#8 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 0
updated Apr 17, 2020
IMPiris: test data

#9 · created Apr 15, 2020 by Valentina Galata IMP
- CLOSED
- 1
updated May 05, 2020
IMPiris: logging in R-scripts

#11 · created Apr 16, 2020 by Valentina Galata IMP
- CLOSED
- 3
updated Apr 17, 2020
IMPiris: mv all scripts to scripts/

#12 · created Apr 16, 2020 by Valentina Galata IMP
- CLOSED
- 0
updated Apr 17, 2020
spring-clean: add .gitignore 1 of 1 task completed

#13 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: mv conda_environments and YAML files 3 of 3 tasks completed

#14 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: all scripts in scripts/ 2 of 2 tasks completed

#15 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 0
updated Apr 23, 2020
spring-clean: main YAML file

#16 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: DeepVirFinder 4 of 4 tasks completed

#17 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 0
updated Apr 21, 2020
spring-clean: give snakemake files an extension

#18 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 24, 2020
spring-clean: DeepARG 5 of 5 tasks completed

#19 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: PlasFlow 4 of 4 tasks completed

#20 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: VirSorter 4 of 4 tasks completed

#21 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020