Issues · Laura Denies / PathoFact

New issue

spring-clean: add test workflow 3 of 3 tasks completed

#33 · created Apr 24, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 0
updated Apr 30, 2020
spring-clean: escape special chars in rules properly

#32 · created Apr 23, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 0
updated Apr 30, 2020
spring-clean: args in virulence_prediction.py and rule classifier in the vir step

#31 · created Apr 23, 2020 by Valentina Galata spring-clean bug clean-up
- CLOSED
- 1
updated Apr 23, 2020
spring-clean: test data set 3 of 3 tasks completed

#30 · created Apr 23, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 1
updated Apr 29, 2020
spring-clean: snakemake rules: use names in shell/run/script

#29 · created Apr 21, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 0
updated Apr 30, 2020
spring-clean: logging

#28 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 0
updated Apr 21, 2020
spring-clean: snakemake rules indentation

#26 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 2
updated Apr 21, 2020
spring-clean: rm `configfile` from snakemake rule files

#25 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 1
- 0
updated Apr 21, 2020
spring-clean: add workflow parameter 2 of 2 tasks completed

#24 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up enhancement
- CLOSED
- 1
- 2
updated Apr 21, 2020
spring-clean: clean up YAML files

#23 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 21, 2020
spring-clean: HMMER 3 of 3 tasks completed

#22 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 3
updated Apr 21, 2020
spring-clean: VirSorter 4 of 4 tasks completed

#21 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: PlasFlow 4 of 4 tasks completed

#20 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: DeepARG 5 of 5 tasks completed

#19 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: give snakemake files an extension

#18 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 24, 2020
spring-clean: DeepVirFinder 4 of 4 tasks completed

#17 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 0
updated Apr 21, 2020
spring-clean: main YAML file

#16 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: all scripts in scripts/ 2 of 2 tasks completed

#15 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 0
updated Apr 23, 2020
spring-clean: mv conda_environments and YAML files 3 of 3 tasks completed

#14 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: add .gitignore 1 of 1 task completed

#13 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up
- CLOSED
- 1
- 0
updated Apr 20, 2020