Issues · Laura Denies / PathoFact

New issue

DeepARG -- git lsf issue

#3 · created Apr 14, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies enhancement
- CLOSED
- 3
updated Jan 12, 2021
spring-clean: main YAML file

#16 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 0
updated Apr 20, 2020
spring-clean: DeepVirFinder 4 of 4 tasks completed

#17 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 0
updated Apr 21, 2020
spring-clean: DeepARG 5 of 5 tasks completed

#19 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: PlasFlow 4 of 4 tasks completed

#20 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: VirSorter 4 of 4 tasks completed

#21 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 1
updated Apr 21, 2020
spring-clean: HMMER 3 of 3 tasks completed

#22 · created Apr 20, 2020 by Valentina Galata spring-clean clean-up dependencies
- CLOSED
- 1
- 3
updated Apr 21, 2020
Replace SignalP

#34 · created May 05, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies enhancement
- CLOSED
- 4
updated Sep 30, 2021
Dependency gcc/g++

#46 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 dependencies
- CLOSED
- 0
updated Jan 12, 2021
More cores used than specified

#47 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jul 09, 2021
Replace SeqKit

#49 · created Jun 08, 2020 by Valentina Galata Paper review - Microbiome - 1 bug dependencies
- CLOSED
- 1
updated Jun 11, 2020
Test workflow and common run fails at RGI step at biopython

#72 · created May 19, 2021 by Michal Zeman dependencies documentation
- CLOSED
- 20
updated Sep 06, 2021