Error in rule splitting
Error in rule splitting: jobid: 30 output: path/PathoFact_results/splitted/SRR3401469.contigs/ log: path/test/PathoFact_results/logs/SRR3401469.contigs/split_ORF.log (check log file(s) for error message) conda-env: path/PathoFact/.snakemake/conda/a010a931 shell:
python scripts/split.py path/PathoFact_results/PathoFact_intermediate/renamed/SRR3401469.contigs_ID.faa 10000 path/PathoFact_results/splitted/SRR3401469.contigs/ &> path/PathoFact_results/logs/SRR3401469.contigs/split_ORF.log
(exited with non-zero exit code)
Updating job 18. Updating job 19. Creating conda environment envs/HMMER.yaml... Downloading remote packages. [Thu Feb 24 19:39:58 2022] Error in rule splitting: jobid: 28 output: path/PathoFact_results/PathoFact_intermediate/splitted/SRR3401469.contigs/ log: path/PathoFact_results/PathoFact_intermediate/logs/SRR3401469.contigs/split_ORF.log (check log file(s) for error message) conda-env: path/PathoFact/.snakemake/conda/a010a931 shell:
python scripts/split.py path/PathoFact_results/PathoFact_intermediate/PathoFact_intermediate/renamed/SRR3401469.contigs_ID.faa 10000 path/PathoFact_results/PathoFact_intermediate/splitted/SRR3401469.contigs/ &> path/PathoFact_results/PathoFact_intermediate/logs/SRR3401469.contigs/split_ORF.log
(exited with non-zero exit code)
Removing output files of failed job splitting since they might be corrupted: path/PathoFact_results/splitted/SRR3401469.contigs/ Removing output files of failed job splitting since they might be corrupted: path/PathoFact_results/PathoFact_intermediate/splitted/SRR3401469.contigs/ Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: /lomi_home/gaoyang/software/PathoFact/.snakemake/log/2022-02-24T184853.821696.snakemake.log