error while running run_PLASMID
Hi, I am trying to test for the correct installation of PathoFact using the test module. Unfortunately I get this message:
Error in rule run_PLASMID: jobid: 39 output: test/output_test_again/PathoFact_intermediate/MGE/plasmid/PlasFlow/test_sample/group_1_plasflow_prediction.tsv log: test/output_test_again/logs/test_sample/group_1_plasflow_prediction.log (check log file(s) for error message) conda-env: /net/fs-1/home01/sale/PathoFact/PathoFact/.snakemake/conda/d6afdeea shell:
PlasFlow.py --input test/output_test_again/PathoFact_intermediate/MGE/plasmid_splitted/test_sample/group_1.fasta --output test/output_test_again/PathoFact_intermediate/MGE/plasmid/PlasFlow/test_sample/group_1_plasflow_prediction.tsv --threshold 0.7 &> test/output_test_again/logs/test_sample/group_1_plasflow_prediction.log
(exited with non-zero exit code)Do you have any suggestion on how to solve this issue? (log file is attached) Thanks very much in advance, Kind Regards, Sabina group_1_plasflow_prediction.log