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  • #61
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Issue created Mar 17, 2021 by sabina-llr@sabina-llr

error while running run_PLASMID

Hi, I am trying to test for the correct installation of PathoFact using the test module. Unfortunately I get this message:

Error in rule run_PLASMID: jobid: 39 output: test/output_test_again/PathoFact_intermediate/MGE/plasmid/PlasFlow/test_sample/group_1_plasflow_prediction.tsv log: test/output_test_again/logs/test_sample/group_1_plasflow_prediction.log (check log file(s) for error message) conda-env: /net/fs-1/home01/sale/PathoFact/PathoFact/.snakemake/conda/d6afdeea shell:

    PlasFlow.py --input test/output_test_again/PathoFact_intermediate/MGE/plasmid_splitted/test_sample/group_1.fasta --output test/output_test_again/PathoFact_intermediate/MGE/plasmid/PlasFlow/test_sample/group_1_plasflow_prediction.tsv --threshold 0.7 &> test/output_test_again/logs/test_sample/group_1_plasflow_prediction.log
    
    (exited with non-zero exit code)

Do you have any suggestion on how to solve this issue? (log file is attached) Thanks very much in advance, Kind Regards, Sabina group_1_plasflow_prediction.log

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