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  • Laura Denies
  • PathoFact
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  • #55

Closed
Open
Created Dec 24, 2020 by Ghost User@ghost

SyntaxError in line 85, Preprocessing.smk

Hey, I have read the PathoFact publication. Very impressing, thank you very much! I have tried to install and test the tool with my own data, but I always get stuck in the initial run (also with the test run).

I get the following error message:

SyntaxError in line 85 of /PathoFact/rules/Universal/Preprocessing.smk:
invalid syntax
File "/PathoFact/Snakefile", line 8, in <module>
File "/PathoFact/workflows/Combine_PathoFact_workflow.smk", line 3, in <module>


Any ideas on how I can fix the problem?
Thank you very much in advance!

Marie
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