Commits · e0939b4e2a96110e392851564969b59fcfb327a4 · Laura Denies / PathoFact

21 Apr, 2020 7 commits
- added .snk extension to snakemake files in rules/ and workflows/ (issue #18 ) · e0939b4e
  Valentina Galata authored Apr 21, 2020
  
  e0939b4e
- format fix in rules/Virulence (issue #26 ) · e99a228f
  Valentina Galata authored Apr 21, 2020
  
  e99a228f
- format fix in rules/Universal (issue #26 ) · a37ed46c
  Valentina Galata authored Apr 21, 2020
  
  a37ed46c
- format fix in rules/Toxin (issue #26 ) · 02d34030
  Valentina Galata authored Apr 21, 2020
  
  02d34030
- format fix in rules/AMR (issue #26 ) · d0581e48
  Valentina Galata authored Apr 21, 2020
  
  d0581e48
- format fix in workflow files (issue #26 ) · 25774a3f
  Valentina Galata authored Apr 21, 2020
  
  25774a3f
- format fix in Snakefile (issue #26 ) · 086684df
  Valentina Galata authored Apr 21, 2020
  
  086684df
20 Apr, 2020 12 commits
- DeepVirFinder: changed path in config.yaml, deleted dir in scripts/, rm in set-up.sh (issue #17 ) · 616d46cd
  Valentina Galata authored Apr 20, 2020
  
  616d46cd
- added DeepVirFinder as git submodule (issue #17 ) · b56f7fd0
  Valentina Galata authored Apr 20, 2020
  
  b56f7fd0
- added PathoFact.yaml (issue #16 ) · 21ab3f8f
  Valentina Galata authored Apr 20, 2020
  
  21ab3f8f
- adjusted paths to scripts in rules (issue #15 ) · 33756c49
  Valentina Galata authored Apr 20, 2020
  
  33756c49
- rm .snakemake dir in workflows/ (issue #13 ) · 27eb51b0
  Valentina Galata authored Apr 20, 2020
  
  27eb51b0
- mv scripts in rules/ to scripts/ (issue #15 ) · ba3bf94b
  Valentina Galata authored Apr 20, 2020
  
  ba3bf94b
- adjusted paths to YAML files in rules (issue #14 ) · f2d5c20f
  Valentina Galata authored Apr 20, 2020
  
  f2d5c20f
- rm .snakemake dir in rules/Virulence (issue #13 ) · 0d648fe6
  Valentina Galata authored Apr 20, 2020
  
  0d648fe6
- renamed AMR.yml to DeepARG.yaml (issue #14 ); updated gitignore and rm a *.swp file (issue #13 ) · 4c20e060
  Valentina Galata authored Apr 20, 2020
  
  4c20e060
- changed dir and names of conda YAML files (issue #14 ) · 7a0b2a1e
  Valentina Galata authored Apr 20, 2020
  
  7a0b2a1e
- mv conda_environments to envs (issue #14 ) · 8ed38ba0
  Valentina Galata authored Apr 20, 2020
  
  8ed38ba0
- added gitignore (issue #13 ) · 36f530f1
  Valentina Galata authored Apr 20, 2020
  
  36f530f1
17 Apr, 2020 1 commit
- Updated AMR_MGE.R · 1fe55556
  Laura Denies authored Apr 17, 2020
  
  1fe55556
08 Apr, 2020 1 commit
- Update Snakefile · aacfeddb
  Laura Denies authored Apr 08, 2020
  
  aacfeddb
24 Mar, 2020 5 commits
- Update PathoFact.R · 8af093ef
  Laura Denies authored Mar 24, 2020
  
  8af093ef
- Update AMR_MGE.R · 9689fc84
  Laura Denies authored Mar 24, 2020
  
  9689fc84
- Update ownHMM_library.R · 78d1317c
  Laura Denies authored Mar 24, 2020
  
  78d1317c
- Update Combine_PathoFact_workflow · 0028bbdd
  Laura Denies authored Mar 24, 2020
  
  0028bbdd
- Update Snakefile · dd21f7e2
  Laura Denies authored Mar 24, 2020
  
  dd21f7e2
12 Feb, 2020 1 commit
- Update AMR_MGE.R · c33869cf
  Laura Denies authored Feb 12, 2020
  
  c33869cf
06 Feb, 2020 2 commits
- Update AMR.yml · 2788ce45
  Laura Denies authored Feb 06, 2020
  
  2788ce45
- Update set-up.sh · 7d31c74b
  Laura Denies authored Feb 06, 2020
  
  7d31c74b
22 Jan, 2020 2 commits
- Update ViruTox.R · cf4d6d61
  Laura Denies authored Jan 22, 2020
  
  cf4d6d61
- Update Virulence_workflow · b0a36108
  Laura Denies authored Jan 22, 2020
  
  b0a36108
21 Jan, 2020 7 commits
- Update Combine_ViruTox_workflow · 5d90cef4
  Laura Denies authored Jan 21, 2020
  
  5d90cef4
- Update set-up.sh · 9487968d
  Laura Denies authored Jan 21, 2020
  
  9487968d
- Update README.md · ef00ab46
  Laura Denies authored Jan 21, 2020
  
  ef00ab46
- Update README.md · 0b03f678
  Laura Denies authored Jan 21, 2020
  
  0b03f678
- Update README.md · 3d0e05a5
  Laura Denies authored Jan 21, 2020
  
  3d0e05a5
- Update README.md · 997ab2bb
  Laura Denies authored Jan 21, 2020
  
  997ab2bb
- Update set-up.sh · dd2acbe7
  Laura Denies authored Jan 21, 2020
  
  dd2acbe7
20 Jan, 2020 2 commits
- Update set_up.sh · 9fbe0828
  Laura Denies authored Jan 20, 2020
  
  9fbe0828
- Add new file · 5d60fb0d
  Laura Denies authored Jan 20, 2020
  
  5d60fb0d