Commits · 804a5f501051318476a7c038caaa76c1ab61288d · Laura Denies / PathoFact

22 Jun, 2020 3 commits
- make intermediate files temp · 1a2c8a22
  Laura Denies authored Jun 22, 2020
  
  1a2c8a22
- update PathoFact report · 97113017
  Laura Denies authored Jun 22, 2020
  
  97113017
- update Toxin_report with SignalP v5.0 results · 850f0c34
  Laura Denies authored Jun 22, 2020
  
  850f0c34
19 Jun, 2020 1 commit
- updated signalp to v5.0 · 4e54bc02
  Laura Denies authored Jun 19, 2020
  
  4e54bc02
11 Jun, 2020 1 commit
- add Prodigal and new split script · 5d05b9d0
  Laura Denies authored Jun 11, 2020
  
  5d05b9d0
09 Jun, 2020 1 commit
- adjusted the rules to include mem and runtime for cluster config: updated... · 6589efab
  Valentina Galata authored Jun 09, 2020 and Laura Denies committed Jun 09, 2020
```
adjusted the rules to include mem and runtime for cluster config: updated configs; added slurm config; added cluster scripts; other minor updates
```
  6589efab
30 Apr, 2020 2 commits
- replaced index by name when accessing snakemake variables (issue #29 ) · 46961fc8
  Valentina Galata authored Apr 30, 2020
  
  46961fc8
- escaping tabs in rule cmds properly (issue #32 ) · 0ba12560
  Valentina Galata authored Apr 30, 2020
  
  0ba12560
24 Apr, 2020 1 commit
- *.snk to *.smk (issue #18 ) · 0a7b2929
  Valentina Galata authored Apr 24, 2020
  
  0a7b2929
21 Apr, 2020 5 commits
- added log files to snakemake rules and logging in Rscripts (issue #28 ) · e709e686
  Valentina Galata authored Apr 21, 2020
  
  e709e686
- HMMER: added YAML, changed path on config.yaml, added conda in rules (issue #22 ) · 8facd498
  Valentina Galata authored Apr 21, 2020
  
  8facd498
- rm configfile from all snakemake files except Snakefile (issue #25 ) · 9d5a1320
  Valentina Galata authored Apr 21, 2020
  
  9d5a1320
- added .snk extension to snakemake files in rules/ and workflows/ (issue #18 ) · e0939b4e
  Valentina Galata authored Apr 21, 2020
  
  e0939b4e
- format fix in rules/Toxin (issue #26 ) · 02d34030
  Valentina Galata authored Apr 21, 2020
  
  02d34030
20 Apr, 2020 3 commits
- adjusted paths to scripts in rules (issue #15 ) · 33756c49
  Valentina Galata authored Apr 20, 2020
  
  33756c49
- mv scripts in rules/ to scripts/ (issue #15 ) · ba3bf94b
  Valentina Galata authored Apr 20, 2020
  
  ba3bf94b
- adjusted paths to YAML files in rules (issue #14 ) · f2d5c20f
  Valentina Galata authored Apr 20, 2020
  
  f2d5c20f
24 Mar, 2020 1 commit
- Update ownHMM_library.R · 78d1317c
  Laura Denies authored Mar 24, 2020
  
  78d1317c
17 Jan, 2020 1 commit
- Initial commit · 70401ab2
  Laura Denies authored Jan 17, 2020
  
  70401ab2