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Commit fef0c395 authored by Laura Denies's avatar Laura Denies
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Update README.md

parent 61822371
......@@ -25,15 +25,6 @@ chmod u+x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh # follow the instructions
```
## Pipeline environment
```bash
# create the conda environment
conda env create -f=envs/PathoFact.yaml
```
You can activate and deactivate the environment using `conda activate PathoFact` and `conda deactivate`, respectively.
## PathoFact
Clone the repository and its sub-modules:
......@@ -52,6 +43,15 @@ Perform futher installation/configuration steps:
./set-up.sh
```
## Pipeline environment
```bash
# create the conda environment
conda env create -f=envs/PathoFact.yaml
```
You can activate and deactivate the environment using `conda activate PathoFact` and `conda deactivate`, respectively.
## Dependency: `SignalP`
Required version: `4.1`
......
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