Commit fc161ba3 authored by Valentina Galata's avatar Valentina Galata
Browse files

updated test/README.md (issue #33)

parent 0ab3c9c0
Input files
# Test data set
This is a data set to test the `PathoFact` pipeline.
See `README.md` in parent directory for `PathoFact` set-up instructions.
## Input files
How input files were created:
```bash
# *.fna, *.faa and *.gff
......@@ -9,3 +17,12 @@ rsync -avP /work/projects/ecosystem_biology/local_tools/IMP3/test/testRAW/run150
# set-up: modify files, create other required files
./set-up.sh
```
## Test run
```
# activate env
conda activate PathoFact
# run the pipeline
snakemake -s test/Snakefile --use-conda --reason --cores 1 -p
```
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