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Laura Denies
PathoFact
Commits
fc161ba3
Commit
fc161ba3
authored
Apr 29, 2020
by
Valentina Galata
Browse files
updated test/README.md (issue
#33
)
parent
0ab3c9c0
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1
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test/README.md
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fc161ba3
Input files
# Test data set
This is a data set to test the
`PathoFact`
pipeline.
See
`README.md`
in parent directory for
`PathoFact`
set-up instructions.
## Input files
How input files were created:
```
bash
# *.fna, *.faa and *.gff
...
...
@@ -9,3 +17,12 @@ rsync -avP /work/projects/ecosystem_biology/local_tools/IMP3/test/testRAW/run150
# set-up: modify files, create other required files
./set-up.sh
```
## Test run
```
# activate env
conda activate PathoFact
# run the pipeline
snakemake -s test/Snakefile --use-conda --reason --cores 1 -p
```
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