added .snk extension to snakemake files in rules/ and workflows/ (issue #18)

e0939b4e · Valentina Galata · e99a228f · e0939b4e · e0939b4e · e0939b4e
Commit e0939b4e authored Apr 21, 2020 by Valentina Galata
18 changed files
--- a/rules/AMR/AMR
+++ b/rules/AMR/AMR
--- a/rules/AMR/Combine_MGE_AMR
+++ b/rules/AMR/Combine_MGE_AMR
--- a/rules/AMR/Phage
+++ b/rules/AMR/Phage
--- a/rules/AMR/Plasmid
+++ b/rules/AMR/Plasmid
--- a/rules/Toxin/Combine_Toxin_SignalP
+++ b/rules/Toxin/Combine_Toxin_SignalP
--- a/rules/Toxin/Toxin
+++ b/rules/Toxin/Toxin
--- a/rules/Toxin/Toxin_report
+++ b/rules/Toxin/Toxin_report
--- a/rules/Universal/Combine_PathoFact
+++ b/rules/Universal/Combine_PathoFact
--- a/rules/Universal/Preprocessing
+++ b/rules/Universal/Preprocessing
--- a/rules/Universal/Preprocessing_contig
+++ b/rules/Universal/Preprocessing_contig
--- a/rules/Universal/SignalP
+++ b/rules/Universal/SignalP
--- a/rules/Virulence/Combine_Virulence_SignalP
+++ b/rules/Virulence/Combine_Virulence_SignalP
--- a/rules/Virulence/Virulence
+++ b/rules/Virulence/Virulence
--- a/rules/Virulence/Virulence_report
+++ b/rules/Virulence/Virulence_report
--- a/workflows/AMR_workflow
+++ b/workflows/AMR_workflow
--- a/workflows/Combine_PathoFact_workflow
+++ b/workflows/Combine_PathoFact_workflow
--- a/workflows/Toxin_workflow
+++ b/workflows/Toxin_workflow
--- a/workflows/Virulence_workflow
+++ b/workflows/Virulence_workflow