Commit db9dfcc4 authored by Valentina Galata's avatar Valentina Galata
Browse files

changed file paths back (rm test/) in test/set-up.sh (issue #30)

parent 6af75675
#!/bin/bash -l
# modify *.faa: rm record descriptions
sed -i '/^>/ s/ .*//' test/test_sample.faa
sed -i '/^>/ s/ .*//' test_sample.faa
# *.gff to *.contig: contig ID, feature ID
sed -n '/^##gff/,/^##FASTA/p' test/test_sample.gff | grep -v '^#' | cut -f1,9 | cut -d';' -f1 | sed 's/ID=//' > test/test_sample.contig
sed -n '/^##gff/,/^##FASTA/p' test_sample.gff | grep -v '^#' | cut -f1,9 | cut -d';' -f1 | sed 's/ID=//' > test_sample.contig
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