Commit c33869cf authored by Laura Denies's avatar Laura Denies
Browse files

Update AMR_MGE.R

parent 2788ce45
......@@ -17,6 +17,7 @@ Plasmid <- separate(data= Plasmid, col=label, into=c("left", "right"), sep="\\."
Plasmid <- Plasmid %>% select(1,2)
colnames(Plasmid) <-c("ContigID","Plasmid_prediction")
Plasmid <- Plasmid %>% filter(ContigID != "contig_name")
Plasmid$ContigID <- sprintf("%010d", Plasmid$ContigID)
Plasmid_translation <- read.delim(file = snakemake@input[[4]], header=FALSE)
colnames(Plasmid_translation) <- c("ContigID", "Contig_Name")
......
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